Publications

Publications and Preprints of Virology, Immunology & Microbiology Faculty and Trainees, 2025

1. Akahata W, Komori M, Morey AL, Quinones-Molina AA, Hood JB, Fofana J, Romero L, Peters E, Webber JD, Meeks T, Przygonska PA, Steinberg I, Ober E, Kim T, Rogan DC, Matsuda K, Smith JF, Gummuluru S, Connors M, Akiyama H. Incorporation of 5-methylcytidine alleviates RIG-I-mediated innate immune responses to a self-amplifying RNA vaccine. Sci Transl Med. 2025;17(824):eadz2276. Epub 2025/11/12 23:29. doi: 10.1126/scitranslmed.adz2276. PubMed PMID: 41223248.
2. Anderson DJ, Bearak JM, Grimstad FW, Palanee-Phillips T, van der Straten A. Biomedical innovations in contraception: gaps, obstacles, and solutions for sexual and reproductive health. Lancet. 2025;406(10515):2119-32. Epub 2025/11/02. doi: 10.1016/S0140-6736(25)01187-0. PubMed PMID: 41176392.
3. Argade MD, Achi JG, Bott R, Morsheimer KM, Owen CD, Zielinski CA, Gaisin AM, Alvarez M, Moore TW, Bu F, Li F, Cameron M, Anantpadma M, Davey RA, Peet NP, Rong L, Gaisina IN. Guardians at the Gate: Optimization of Small Molecule Entry Inhibitors of Ebola and Marburg Viruses. J Med Chem. 2025;68(1):135-55. Epub 2024/12/16. doi: 10.1021/acs.jmedchem.4c01646. PubMed PMID: 39680623; PMCID: PMC12381577.
4. Arnold CG, McCartney MM, Davis CE, Mizgerd JP, Kenyon NJ. Harnessing breath biomarkers for pneumonia diagnosis and prognosis. Expert Rev Respir Med. 2025:1-10. Epub 2025/11/24. doi: 10.1080/17476348.2025.2593629. PubMed PMID: 41284337; PMCID: PMC12688321.
5. Bean DJ, Liang YM, Avila F, He X, Asundi A, Sagar M. Endemic coronavirus infection is associated with SARS-CoV-2 Fc receptor-binding antibodies. J Virol. 2025;99(6):e0055025. Epub 2025/05/19. doi: 10.1128/jvi.00550-25. PubMed PMID: 40387363; PMCID: PMC12172460.
6. Brady C, Tipton T, Carnell O, Longet S, Gooch K, Hall Y, Salguero J, Tomic A, Carroll M. A systems biology approach to define SARS-CoV-2 correlates of protection. NPJ Vaccines. 2025;10(1):69. Epub 2025/04/15. doi: 10.1038/s41541-025-01103-2. PubMed PMID: 40229322; PMCID: PMC11997207 and had no role in the peer-review or decision to publish this manuscript. All other authors declare no financial or non-financial competing interests.
7. Caobi A, Su CM, Beusch CM, Kenney D, Darling TL, Feng S, Semaan M, Wacquiez A, Sanders NL, Tully ES, Chen DY, Evdokimova M, Ding Z, Jones D, Alysandratos KD, Mizgerd JP, Kirchdoerfer RN, Kotton DN, Douam F, Crossland NA, Boon ACM, Gordon DE, Baker SC, Saeed M. SARS-CoV-2 nsp15 enhances viral virulence by subverting host antiviral defenses. Proc Natl Acad Sci U S A. 2025;122(24):e2426528122. Epub 2025/06/12. doi: 10.1073/pnas.2426528122. PubMed PMID: 40504150; PMCID: PMC12184426.
8. Carlson RJ, Patten JJ, Stefanakis G, Soong BY, Radhakrishnan A, Singh A, Thakur N, Sheehan KCF, Amarasinghe GK, Hacohen N, Basler CF, Leung DW, Uhler C, Davey RA, Blainey PC. Single-cell image-based screens identify host regulators of Ebola virus infection dynamics. Nat Microbiol. 2025;10(8):1989-2002. Epub 2025/07/25. doi: 10.1038/s41564-025-02034-3. PubMed PMID: 40707832; PMCID: PMC12671480.
9. Cavalli L, Taylor BP, Schaeffer B, Turcinovic J, Connor JH, Hanage WP. SARS-CoV-2 Intra-host Variation Shows Evidence of Transmission and Convergent Evolution in a University Surveillance Cohort. bioRxiv. 2025. Epub 2025/12/25. doi: 10.64898/2025.12.12.694004. PubMed PMID: 41446131; PMCID: PMC12724715.
10. Collins DR, Olatotse MJ, Urbach JM, Zhuo Z, Zhao S, Lilie TJ, Raymond R, He X, Chen JY, Coffey B, Arshad U, Racenet ZJ, Wisner H, Casquero C, Guo X, Walters LC, Davis JM, Jordan HC, Sohail N, Clayton KL, Sagar M, Billingsley J, Sui SH, Mazzola E, Walker BD, Tsibris A. CD8(+) T cell recall cytotoxicity during chronic treated HIV-1 infection is associated with limited reservoir size and activity. medRxiv. 2025. Epub 2025/11/24. doi: 10.1101/2025.10.10.25337688. PubMed PMID: 41282862; PMCID: PMC12633139 DynaMed, EBSCO. The remaining authors declare that no competing interests exist.
11. Cross RW, Prasad AN, Turcinovic J, Borisevich V, Agans KN, Woolsey C, Deer DJ, Harrison MB, O’Toole R, Villasante-Tezanos A, Velasquez-Reyes J, Dobias NS, Connor JH, Fenton KA, Geisbert TW. Lassa fever in African green monkeys: Clinical disease and fatal outcome are associated with systemic viral dissemination and inflammation. Cell Rep Med. 2025;6(8):102263. Epub 2025/08/06. doi: 10.1016/j.xcrm.2025.102263. PubMed PMID: 40763738; PMCID: PMC12432369.
12. Desai R, Tan F, Wu M, Browning JL, Theodore S, Zhang M, Skaug B, Chawla HS, Singh M, Aglyamov S, Larin KV, Mayes M, Assassi S. Assessment of Skin in Patients With Systemic Sclerosis Using High-Frequency Ultrasound and Shear Wave Elastography: A Comparative Study With Histology, Molecular, and Clinical Parameters. Arthritis Care Res (Hoboken). 2025. Epub 2025/10/16. doi: 10.1002/acr.25658. PubMed PMID: 41098036.
13. Dohadwala S, Shah P, Farrell MK, Politch JA, Marathe J, Costello CE, Anderson DJ. Sialidases derived from Gardnerella vaginalis and Prevotella timonensis remodel the sperm glycocalyx and impair sperm function. Glycobiology. 2025;35(11). Epub 2025/10/30. doi: 10.1093/glycob/cwaf067. PubMed PMID: 41165775; PMCID: PMC12599315.
14. Donahue CJ, Kesari AS, Thakur N, Wang L, Stubbs SH, Williams CG, Sharma SB, Kirby CD, Leung DW, Aryal UK, Basler CF, LaCount DJ, Davey RA. A protein-proximity screen reveals Ebola virus co-opts the mRNA decapping complex through the scaffold protein EDC4. Nat Commun. 2025;16(1):8485. Epub 2025/09/27. doi: 10.1038/s41467-025-63392-4. PubMed PMID: 41006235; PMCID: PMC12475165.
15. Doud JM, Geib MT, Politch JA, Whaley K, Anderson DJ, Marathe JG. Revolutionizing male contraception: Personal lubricants as a novel way to deliver the Human Contraception Antibody. bioRxiv. 2025. Epub 2025/09/02 22:34. doi: 10.1101/2025.08.14.670442. PubMed PMID: 40894626; PMCID: PMC12393346.
16. Fearns R, Liang B. Introduction to Respiratory Syncytial Virus. Methods Mol Biol. 2025;2948:1-17. Epub 2025/08/29. doi: 10.1007/978-1-0716-4666-3_1. PubMed PMID: 40879898.
17. Flores EY, Hume AJ, Olejnik J, Mithal A, D’Amico A, Yang M, Bawa P, Wang F, O’Connell AK, Tseng A, Crossland NA, Mostoslavsky G, Muhlberger E. Filovirus infection disrupts epithelial barrier function and ion transport in human iPSC-derived gut organoids. PLoS Pathog. 2025;21(11):e1013698. Epub 2025/11/24. doi: 10.1371/journal.ppat.1013698. PubMed PMID: 41284734; PMCID: PMC12698023.
18. Flores EY, Mithal A, Bawa P, Wang F, D’Amico A, O’Connell AK, Gertje HP, Tseng AE, Crossland NA, Alekseyev Y, Mostoslavsky G. Human-induced Pluripotent Stem Cell-derived Gut Organoids Recapitulate Regional Specific Genetic Programs and a Role for cAMP in Lineage Specification. Cell Mol Gastroenterol Hepatol. 2025;19(9):101534. Epub 2025/05/18. doi: 10.1016/j.jcmgh.2025.101534. PubMed PMID: 40381917; PMCID: PMC12365535.
19. Fofana J, Zahara S, Chan T, Zang H, Reinhard BM, Gummuluru S. Enhancing antiretroviral delivery to secondary lymph nodes by targeting CD169 + macrophages with HIV-mimicking nanoparticles. Sci Rep. 2025;15(1):45302. Epub 2025/11/26. doi: 10.1038/s41598-025-29002-5. PubMed PMID: 41291024; PMCID: PMC12748623.
20. Fredberg JJ, Mizgerd JP. Combining innovative methodologies with deep personal connections to further physiology research: lessons from Joseph D. Brain, ScD. Am J Physiol Lung Cell Mol Physiol. 2025;329(2):L197-L9. Epub 2025/06/02. doi: 10.1152/ajplung.00281.2024. PubMed PMID: 40454782.
21. Guo W, Crossland N, Crott JW. Mediterranean diet improves liver health but does not protect against azoxymethane-induced colon tumorigenesis compared to Western diet in A/J mice. Exp Mol Pathol. 2025;141:104953. Epub 2025/02/08. doi: 10.1016/j.yexmp.2025.104953. PubMed PMID: 39919552; PMCID: PMC11934114.
22. Hao S, Tomic I, Lindsey BB, Jagne YJ, Hoschler K, Meijer A, Carreno Quiroz JM, Meade P, Sano K, Peno C, Costa-Martins AG, Bogaert D, Kampmann B, Nakaya H, Krammer F, de Silva TI, Tomic A. Integrative mapping of preexisting influenza immune landscapes predicts vaccine response. J Clin Invest. 2025;135(18). Epub 2025/07/15. doi: 10.1172/JCI189300. PubMed PMID: 40663396; PMCID: PMC12490229.
23. Harlow OS, Ravi VR, Ke F, Sanders NL, Armstrong E, Mizgerd JP, Shenoy AT. The mysterious case of missing lymphocytes: a cautionary tale of interinstitutional variability in outcomes of lung dissociation protocols. Am J Physiol Lung Cell Mol Physiol. 2025;328(2):L260-L6. Epub 2025/01/09. doi: 10.1152/ajplung.00323.2024. PubMed PMID: 39786964; PMCID: PMC12178127.
24. Hu S, Kim H, Yang P, Yu Z, Ludeke B, Mobilia S, Pan J, Stratton M, Bian Y, Fearns R, Abraham J. Structural and functional analysis of the Nipah virus polymerase complex. Cell. 2025;188(3):688-703 e18. Epub 2025/01/22. doi: 10.1016/j.cell.2024.12.021. PubMed PMID: 39837328; PMCID: PMC11813165.
25. Hughes IK, Hood JB, Quinones-Molina AA, Akiyama H, Gummuluru S. Evasion of CARD8 activation during HIV-1 assembly. Sci Adv. 2025;11(46):eadz1069. Epub 2025/11/12 23:30. doi: 10.1126/sciadv.adz1069. PubMed PMID: 41223282; PMCID: PMC12609157 (entitled “Materials and methods for targeting virally infected cells,” US patent application no. 63/769,553, filed by Boston University). All other authors declare that they have no competing interests.
26. Hughes IK, Kharytonchyk S, Ramaswamy S, Jalloh S, Hood JB, He X, Henderson AJ, Akiyama H, Telesnitsky A, Gummuluru S. 5′ cap sequestration is required for sensing of unspliced HIV-1 RNA by MDA5. bioRxiv. 2025. Epub 2025/09/05. doi: 10.1101/2025.08.20.671346. PubMed PMID: 40909469; PMCID: PMC12407712.
27. Jalloh S, Hughes IK, Akiyama H, Gojanovich AD, Quinones-Molina AA, Yang M, Henderson AJ, Mostoslavsky G, Gummuluru S. Expression of intron-containing HIV-1 RNA induces NLRP1 inflammasome activation in myeloid cells. PLoS Biol. 2025;23(9):e3003320. Epub 2025/09/08. doi: 10.1371/journal.pbio.3003320. PubMed PMID: 40920844; PMCID: PMC12416851.
28. Kenney D, Matsuo M, Unali G, Wacquiez A, Saeed M, Douam F. Comprehensive Analysis of the Impact of Weight Loss Thresholds on Mouse Models of Fatal Viral Infection. Viruses. 2025;17(9). Epub 2025/09/27. doi: 10.3390/v17091225. PubMed PMID: 41012653; PMCID: PMC12474137.
29. Kenney D, O’Connell AK, Tseng AE, Turcinovic J, Sheehan ML, Nitido AD, Montanaro P, Gertje HP, Ericsson M, Connor JH, Vrbanac V, Crossland NA, Harly C, Balazs AB, Douam F. Immune signatures of SARS-CoV-2 infection resolution in human lung tissues. PLoS Pathog. 2025;21(9):e1013469. Epub 2025/09/08. doi: 10.1371/journal.ppat.1013469. PubMed PMID: 40920821; PMCID: PMC12425302 following competing interests: A.B.B. is a founder of Cure Systems LLC. The other authors declare no competing interests in relation to this study.
30. Kuhn JH, Adkins S, Alkhovsky SV, An W, Avsic-Zupanc T, Ayllon MA, Bacnik K, Bahl J, Balkema-Buschmann A, Ballinger MJ, Beer M, Bejerman N, Bergeron E, Biedenkopf N, Blair CD, Blasdell KR, Bradfute SB, Briese T, Brown K, Brown PA, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Calisher CH, Calvelage S, Cao M, Casas I, Chabi-Jesus C, Chandran K, Charrel RN, Crane A, Cuypers LN, Bo ED, de la Torre JC, de Souza WM, de Swart RL, Debat HJ, Dheilly NM, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Drexler JF, Duprex WP, Durrwald R, Easton AJ, Elbeaino T, Ergunay K, Eshak MIY, Feng G, Firth AE, Fooks AR, Formenty PBH, Freitas-Astua J, Freuling CM, Gadd T, Gago-Zachert S, Garcia ML, Garcia-Sastre A, Garrison AR, Goldberg TL, Gonzalez JJ, Gouy de Bellocq J, Griffiths A, Groschup MH, Gryseels S, Gutierrez-Aguirre I, Gunther S, Hammond J, Hepojoki J, Horie M, Hume AJ, Hyndman TH, Hoper D, Jiang D, Junglen S, Klempa B, Klingstrom J, Kondo H, Koonin EV, Krupovic M, Kubota K, Kurath G, Kutnjak D, Laenen L, Lambert AJ, Lee B, Li C, Li J, Li JM, Lukashevich IS, Maes P, Marklewitz M, Marshall SH, Marzano SL, McCauley JW, Mehle N, Mirazimi A, Morikawa T, Muhlberger E, Muller T, Naidu R, Natsuaki T, Navarro B, Navarro JA, Neriya Y, Netesov SV, Nicoloso VM, Neumann G, Nokireki T, Nowotny N, Nunes MRT, Ochoa-Corona FM, Palacios G, Pallas V, Papa A, Paraskevopoulou S, Parrish CR, Pauvolid-Correa A, Pecman A, Perez DR, Pfaff F, Plemper RK, Postler TS, Radoshitzky SR, Ramos-Gonzalez PL, Ravnikar M, Resende RO, Reuter G, Reyes CA, Rivarez MPS, Romanowski V, Rubbenstroth D, Rubino L, Runstadler JA, Ruiz-Padilla A, Sabanadzovic S, Salvato MS, Sasaya T, Schmaljohn CS, Schmidt-Posthaus H, Schwemmle M, Seljak G, Seuberlich T, Shi M, Shimomoto Y, Simmonds P, Sironi M, Smith DB, Smither S, Song JW, Spann KM, Spengler JR, Stenglein MD, Takada A, Takemura C, Tammiranta N, Tesh RB, Thornburg NJ, Tischler ND, Tomitaka Y, Tomonaga K, Tordo N, Turina M, Tzanetakis IE, Vaira AM, van den Hoogen B, Vanmechelen B, Vasilakis N, Verbeek M, von Bargen S, Vucurovic A, Wada J, Wahl V, Walker PJ, Wang F, Whitfield AE, Williams JV, Wolf YI, Yanagisawa H, Yang C, Ye G, Yu MC, Zerbini FM, Zhang S, Okland AL, Hughes HR. Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota). J Gen Virol. 2025;106(6). Epub 2025/06/13. doi: 10.1099/jgv.0.002077. PubMed PMID: 40512168; PMCID: PMC12282299.
31. Lam LKM, Gilliland T, Jr., Dunn M, Alcorn-Burckhardt MD, Terada Y, Sun C, Vasilatos S, Midgett M, Williams C, Laughlin A, Lundy J, Gardner CL, Thomas A, Raue HP, Gertje HP, O’Connell AK, Crossland NA, Reed DS, Diamond MS, Slifka MK, Klimstra WB. An inactivated trivalent virion-based vaccine protects against aerosol challenge with encephalitic alphaviruses in mice and macaques. Sci Transl Med. 2025;17(818):eadv7079. Epub 2025/10/01. doi: 10.1126/scitranslmed.adv7079. PubMed PMID: 41032627.
32. Lata S, Yabaji SM, O’Connell AK, Gertje HP, Kirber MT, Crossland NA, Kramnik I. Protocol for 3D multiplexed fluorescent imaging of pulmonary TB lesions using Opal-TSA dyes for signal amplification. STAR Protoc. 2025;6(1):103640. Epub 2025/02/21. doi: 10.1016/j.xpro.2025.103640. PubMed PMID: 39982826; PMCID: PMC11889971.
33. LaVerriere E, Behar S, Sher-Jan C, Liang YM, Sagar M, Connor JH. Genomic Epidemiology of Respiratory Syncytial Virus in a New England Hospital System, 2024. Open Forum Infect Dis. 2025;12(6):ofaf334. Epub 2025/06/26. doi: 10.1093/ofid/ofaf334. PubMed PMID: 40567998; PMCID: PMC12188213.
34. Lin H, Seitz S, Tan Y, Lugagne JB, Wang L, Ding G, He H, Rauwolf TJ, Dunlop MJ, Connor JH, Porco JA, Jr., Tian L, Cheng JX. Label-free nanoscopy of cell metabolism by ultrasensitive reweighted visible stimulated Raman scattering. Nat Methods. 2025;22(5):1040-50. Epub 2025/01/17. doi: 10.1038/s41592-024-02575-1. PubMed PMID: 39820753; PMCID: PMC12074879.
35. McConney CS, Kenney D, Ennis CS, Smith-Mahoney EL, Ayuso MJ, Zhong J, Douam F, Sagar M, Snyder-Cappione JE. Individuals Infected with SARS-CoV-2 Prior to COVID-19 Vaccination Maintain Vaccine-Induced RBD-Specific Antibody Levels and Viral Neutralization Activity for One Year. Viruses. 2025;17(5). Epub 2025/05/28. doi: 10.3390/v17050640. PubMed PMID: 40431652; PMCID: PMC12115583.
36. McGee JE, Kirsch JR, Kenney D, Cerbo F, Chavez EC, Shih TY, Douam F, Wong WW, Grinstaff MW. Complete substitution with modified nucleotides in self-amplifying RNA suppresses the interferon response and increases potency. Nat Biotechnol. 2025;43(5):720-6. Epub 2024/07/09. doi: 10.1038/s41587-024-02306-z. PubMed PMID: 38977924; PMCID: PMC11707045.
37. Messingham KN, Richards PT, Fleck A, Patel RA, Djurkovic M, Elliff J, Connell S, Crowe TP, Munoz Gonzalez J, Gourronc F, Dillard JA, Davey RA, Klingelhutz A, Shtanko O, Maury W. Multiple cell types support productive infection and dynamic translocation of infectious Ebola virus to the surface of human skin. Sci Adv. 2025;11(1):eadr6140. Epub 2025/01/02. doi: 10.1126/sciadv.adr6140. PubMed PMID: 39742475; PMCID: PMC11691639.
38. Nador E, Mausser E, Marathe JG, Politch JA, Thurman AR, Whaley KJ, Anderson DJ. Antibody-dependent complement-mediated sperm cytotoxicity in the endocervix is a dominant contraceptive mechanism of ZB-06 vaginal film. Fertil Steril. 2025;123(3):534-6. Epub 2024/10/25. doi: 10.1016/j.fertnstert.2024.10.026. PubMed PMID: 39447830; PMCID: PMC12269741.
39. Nguyen MA, Williams C, Gard AL, Connor JH. Endothelial growth media components alter SARS-CoV-2 spike-directed growth kinetics. J Virol Methods. 2025;333:115111. Epub 2025/01/30. doi: 10.1016/j.jviromet.2025.115111. PubMed PMID: 39880099.
40. Olejnik J, Meier K, Herrera JN, DeStasio DJ, Deeney DJ, Flores EY, White MR, Hume AJ, Muhlberger E. Harnessing Hazara Virus as a Surrogate for Crimean-Congo Hemorrhagic Fever Virus Enables Inactivation Studies at a Low Biosafety Level. Pathogens. 2025;14(7). Epub 2025/07/30. doi: 10.3390/pathogens14070700. PubMed PMID: 40732746; PMCID: PMC12300750.
41. Ouyang T, Kundu K, Hood J, Cheng B, Mei Y, Gray A, Gummuluru S, Reinhard BM. Plasmon-enhanced photocatalytic nanoreactors for selective inactivation of murine leukemia virus (MLV). Nanoscale Adv. 2025. Epub 2025/12/18. doi: 10.1039/d5na00784d. PubMed PMID: 41409897; PMCID: PMC12706662.
42. Parayil T, Monroe J, Bean DJ, Sagar M. Common Cold Coronavirus Test Positivity Decreased After Widespread SARS-CoV-2 Experience. Open Forum Infect Dis. 2025;12(7):ofaf326. Epub 2025/07/02. doi: 10.1093/ofid/ofaf326. PubMed PMID: 40599488; PMCID: PMC12207968.
43. Parthasarathy S, Saenjamsai P, Hao H, Ferkul A, Pfannenstiel JJ, Bejan DS, Chen Y, Suder EL, Schwarting N, Aikawa M, Muhlberger E, Hume AJ, Orozco RC, Sullivan CS, Cohen MS, Davido DJ, Fehr AR. PARP14 is an interferon-induced host factor that promotes IFN production and affects the replication of multiple viruses. mBio. 2025;16(10):e0229925. Epub 2025/09/12. doi: 10.1128/mbio.02299-25. PubMed PMID: 40937852; PMCID: PMC12505956.
44. Parthasarathy S, Saenjamsai P, Hao H, Ferkul A, Pfannenstiel JJ, Bejan DS, Chen Y, Suder EL, Schwarting N, Aikawa M, Muhlberger E, Hume AJ, Orozco RC, Sullivan CS, Cohen MS, Davido DJ, Fehr AR. PARP14 is an interferon (IFN)-induced host factor that promotes IFN production and affects the replication of multiple viruses. bioRxiv. 2025. Epub 2024/05/07. doi: 10.1101/2024.04.26.591186. PubMed PMID: 38712082; PMCID: PMC11071520.
45. Ramaswamy S, Akiyama H, Berrigan J, Quinones-Molina AA, Olson AJ, Chen Y, Liang Y, Henderson AJ, Asundi A, Sagar M, Gummuluru S. The macrophage-intrinsic MDA5/IRF5 axis drives HIV-1 intron-containing RNA-induced inflammatory responses. J Clin Invest. 2025;135(16). Epub 2025/06/10. doi: 10.1172/JCI187663. PubMed PMID: 40493408; PMCID: PMC12352897.
46. Ravi VR, Korkmaz FT, De Ana CL, Lu L, Shao FZ, Odom CV, Barker KA, Ramanujan A, Niszczak EN, Goltry WN, Martin IMC, Ha CT, Quinton LJ, Jones MR, Fine A, Welch JD, Chen F, Belkina AC, Mizgerd JP, Shenoy AT. Lung CD4(+) resident memory T cells use airway secretory cells to stimulate and regulate onset of allergic airway neutrophilic disease. Cell Rep. 2025;44(3):115294. Epub 2025/02/19. doi: 10.1016/j.celrep.2025.115294. PubMed PMID: 39965565; PMCID: PMC12011213.
47. Richards PT, Fleck AM, Patel R, Fakhimi M, Bohan D, Geoghegan-Barek K, Honko AN, Stolte AE, Plescia CB, Messingham CO, Connell SJ, Crowe TP, Gourronc FA, Carrion R, Jr., Griffiths A, Meyerholz DK, Klingelhutz AJ, Davey RA, Messingham KN, Maury W. Ebola virus’ hidden target: virus transmission to and infection of skin. J Virol. 2025;99(10):e0130025. Epub 2025/09/12. doi: 10.1128/jvi.01300-25. PubMed PMID: 40938099; PMCID: PMC12548420.
48. Schrell L, Fuchs HL, Dickmanns A, Scheibner D, Olejnik J, Hume AJ, Reineking W, Stork T, Muller M, Graaf-Rau A, Diederich S, Finke S, Baumgartner W, Muhlberger E, Balkema-Buschmann A, Dobbelstein M. Inhibitors of dihydroorotate dehydrogenase synergize with the broad antiviral activity of 4′-fluorouridine. Antiviral Res. 2025;233:106046. Epub 2024/12/06. doi: 10.1016/j.antiviral.2024.106046. PubMed PMID: 39638153.
49. Schwoerer MP, Carver S, Cafiero TR, Joyce B, Berggren KA, Suzuki S, Heller B, O’Connell AK, Gertje HP, Crossland NA, Posfai E, Ploss A. Assessment of hepatitis C virus permissiveness in iteratively genetically humanized mice. J Virol. 2025;99(9):e0079325. Epub 2025/09/03. doi: 10.1128/jvi.00793-25. PubMed PMID: 40899815; PMCID: PMC12456128.
50. Schwoerer MP, Carver S, Lin AE, Liu J, Cafiero TR, Berggren KA, Dhawan S, Suzuki S, Heller B, Rodriguez C, O’Connell AK, Gertje HP, Crossland NA, Ploss A. Receptor transporter protein 4 (RTP4)-mediated repression of hepatitis C virus replication in mouse cells. PLoS Pathog. 2025;21(9):e1013412. Epub 2025/09/08. doi: 10.1371/journal.ppat.1013412. PubMed PMID: 40920810; PMCID: PMC12431671.
51. Shastry A, Hiller BE, Sanders NL, Tseng AE, Kothari J, O’Connell AK, Gertje HP, Ha CT, Murzin E, Traber KE, Lederer JA, Jones MR, Douam F, Beach TG, Remick DG, Crossland NA, Monti S, Campbell JD, Mizgerd JP. Sub-phenotypes of pneumonia defined by pulmonary histopathological features. bioRxiv. 2025. Epub 2025/06/06. doi: 10.1101/2025.05.18.654716. PubMed PMID: 40475544; PMCID: PMC12139937.
52. Singh K, Patten JJ, Dimet-Wiley A, Davey RA, Watowich SJ, Chandra A, Leverett J. Unlocking the potential of phytochemicals in inhibiting SARS-CoV-2 M(Pro) protein – an in silico and cell-based approach. Sci Rep. 2025;15(1):22840. Epub 2025/07/02. doi: 10.1038/s41598-025-05907-z. PubMed PMID: 40596019; PMCID: PMC12216938.
53. Skeete C, Sgambettera G, Gojanovich AD, He X, Bryant D, Yang M, Banerjee S, Quinones-Molina AA, Akiyama H, Mostoslavsky G, Henderson AJ, Gummuluru S. Mu opioid receptor activation in microglia enhances HIV-1 infection and HIV-infection-induced inflammatory responses. Front Immunol. 2025;16:1628872. Epub 2025/10/22. doi: 10.3389/fimmu.2025.1628872. PubMed PMID: 41122167; PMCID: PMC12536016.
54. Soucy AM, Brune JE, Jayaraman A, Shenoy AT, Korkmaz FT, Etesami NS, Hiller BE, Martin IM, Goltry WN, Ha CT, Crossland NA, Campbell JD, Beach TG, Traber KE, Jones MR, Quinton LJ, Bosmann M, Frevert CW, Mizgerd JP. Transcriptomic responses of lung mesenchymal cells during pneumonia. JCI Insight. 2025;10(7). Epub 2025/02/25. doi: 10.1172/jci.insight.177084. PubMed PMID: 39998887; PMCID: PMC11981624.
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