Ingenuity Pathway Analysis (IPA) Training and CLC bio Seminar
QIAGEN Bioinformatics at Boston University Medical Campus
Wednesday, April 11th
Ingenuity Pathway Analysis (IPA) and CLC bio Seminar
Session 1: 11:00 TO 12:00
CLC product for secondary analysis
Overview of Application, Importing NGS read data, QC & Pre-processing
- De novo assembly – Genomes & Transcriptomes. Characterizing Contigs, Joining & Finishing
- Mapping/Alignment to Reference, Variant Calling, Annotation & Filtering
- RNA Seq Analysis Workflow & Tools
- Overview of Microbial Modules (Finishing & Microbial Genomics)
CLC Biomedical Workbench & Ingenuity Variant Analysis
- Prebuilt intuitive pipeline for your human DNA-seq data that allows you to quickly go from reads or called variants to identifying and prioritizing the casual variants.
12:00 To 12:30- Pizza Lunch
Session 2: 12;30 TO 2:00
IPA for insightful data analysis and interpretation
- Biological interpretation of gene (including RNAseq), protein and metabolic expression data
- Pathway involvement and change
- Effected biological processes
- Causal regulators and their directional effect on genes, functions and diseases across multiple time points or doses.
- Explore IPA’s knowledge and discovery tools that allow you to relate the most recent literature findings to your research.
- Questions and Answers
Session 3- 2:00 TO 4:00
Available for individual sessions by appointment, email Amar below
Please register ahead of time so we have an accurate
count for lunch
Location: BUMC Instructional Building L214
Presenter:QianDong,Phd
ApplicationScientist
Register: Amar Swami
Amar.Swami@qiagen.com