Ingenuity Pathway Analysis (IPA) Training and CLC bio Seminar

QIAGEN Bioinformatics at Boston University Medical Campus
Wednesday, April 11th
Ingenuity Pathway Analysis (IPA) and CLC bio Seminar

Session 1:  11:00 TO 12:00

CLC product for secondary analysis

Overview of Application, Importing NGS read data, QC & Pre-processing

  • De novo assembly – Genomes & Transcriptomes. Characterizing Contigs, Joining & Finishing
  • Mapping/Alignment to Reference, Variant Calling, Annotation & Filtering
  • RNA Seq Analysis Workflow & Tools
  • Overview of Microbial Modules (Finishing & Microbial Genomics)

CLC Biomedical Workbench & Ingenuity Variant Analysis

  • Prebuilt intuitive pipeline for your human DNA-seq data that allows you to quickly go from reads or called variants to identifying and prioritizing the casual variants.

 12:00 To 12:30- Pizza Lunch

Session 2:  12;30 TO 2:00

IPA for insightful data analysis and interpretation

  • Biological interpretation of gene (including RNAseq), protein and metabolic expression data
  • Pathway involvement and change
  • Effected biological processes
  • Causal regulators and their directional effect on genes, functions and diseases across multiple time points or doses.
  • Explore IPA’s knowledge and discovery tools that allow you to relate the most recent literature findings to your research.
  • Questions and Answers

Session 3- 2:00 TO 4:00

Available for individual sessions by appointment, email Amar below

Please register ahead of time so we have an accurate

count for lunch

Location: BUMC Instructional Building L214
Register: Amar Swami


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