Software and Databases

Software Tool for Rapid Annotation of Proteins (STRAP)
This software tool automatically annotates protein lists with information to assist with interpretation of proteomics mass spectrometry data.

Software Tool for Rapid Annotatioin of Proteins Post-translational Modifications (STRAP PTM)
This software tool annotates protein post-translational modifications from proteomics mass spectrometry data.

Boston University Protein Identification (BUPID)
This program annotates protein top-down tandem mass spectra.

This program is used for interpretation of LC-MS glycomics profiling data sets. Publication

MIRAGE (Minimum Information Required for a Glycomics Experiment)

Boston University Data Analysis (BUDA)

This software is used for analyzing Fourier transform mass spectra.


This sofware is used for extracting targeted compound lists from glycomics liquid chromatography/mass spectrometry data sets. You will need a Google password in order to access this software.

  • Dreyfuss, J. M.; Jacobs, C.; Gindin, Y.; Benson, G.; Staples, G. O.; Zaia, J. Targeted analysis of glycomics liquid chromatography/mass spectrometry data. Anal Bioanal Chem 2011, 399, 727-35. Pubmed Link
  • TTR Database
    This is a database of transthyretin mutations.

    Primary teaching affiliate
    of BU School of Medicine