Student Publications
We are extremely proud of the rigorous scientific training provided by our program, highlighted by a strong publication record by our students as listed below.
2024
Sabatelle RC, Geller A, Li S, Van Heest A, Sachdeva U, Bressler EM, Korunes-Miller JT, Tfayli B, Tal-Mason A, Kharroubi H, Colson YL, Grinstaff MW. Synthesis of amphiphilic amino poly-amido-saccharide and poly lactic acid block copolymers and fabrication of paclitaxel-loaded mucoadhesive nanoparticles. Bioconj Chem 2024 Aug 19. doi: 10.1021/acs.bioconjchem.4c00325.
Adams SC, Nambiar AK, Bressler EM, Raut CP, Colson YL, Wong WW, Grinstaff MW. Immunotherapies for locally aggressive cancers. Adv Drug Deliv Rev 2024;210:115331. PMCID: PMC11228555 (available on 2025-07-01).
Sabatelle RC, Chu NQ, Blessing W, Kharroubi H, Bressler EM, Tsai L, Shih AR, Grinstaff MW, Colson YL. Decreased lung metastasis in triple negative breast cancer following locally-delivered supratherapeutic paclitaxel-loaded polyglycerol carbonate nanoparticle therapy. Biomacromolecules 2024;25:1800-1809. PMCID: PMC11331584.
Choi J, Ceribelli M, Phelan JD, Häupl B, Huang DW, Wright GW, Hsiao T, Morris V, Ciccarese F, Wang B.,Corcoran SR, Scheich S, Yu X, Xu W, Yang Y, Zhao H, Zhou J, Zhang G, Muppidi J, Inghirami GG, Oellerich T, Wilson WH, Thomas CJ, Staudt LM. Molecular targets of glucocorticoids that elucidate their therapeutic efficacy in aggressive lymphomas. Cancer Cell 2024;42:833-849.e12. PMCID: PMC11168741 (available on 2025-05-13).
Corcoran SR, Phelan JD, Choi J, Shevchenko G, Fenner RE, Yu X, Scheich S, Hsiao T, Morris VM, Papachristou EK, Kishore K, D’Santos CS, Ji Y, Pittaluga S, Wright GW, Urlaub H, Pan K-T, Oellerich T, Muppidi J, Hodson DJ, Staudt LM. Molecular determinants of sensitivity to polatuzumab vedotin in diffuse large B cell lymphoma.Cancer Discov 2024;14:1653-1674. doi: 10.1158/2159-8290.cd-23-0802.
Etesami NS, Barker KA, …, Varelas X, Traber KE, Jones MR, Quinton LJ, Maglione PJ, …, Mizgerd JP. B cells in the pneumococcus-infected lung are heterogeneous and require CD4+ T cell help including CD40L to become resident memory B cells. Front Immunol 2024;15:1382638. PMCID: PMC11074383.
Falconer I, Varkanitsa M, Kiran S. Resting-state brain network connectivity is an independent predictor of responsiveness to language therapy in chronic post-stroke aphasia. Cortex 2024;173:296-312. PMCID: PMC11188988 (available on 2025-04-01).
Gagnon KA, Huang J, Hix OT, Hui VW, Hinds A, Bullitt E, Eyckmans J, Kotton DN, Chen CS. Multicompartment duct platform to study epithelial–endothelial crosstalk associated with lung adenocarcinoma. APL Bioeng 2024;8:026126. PMCID: PMC11191334.
Cheng TY, Kim B, Zimmermann BB, Robinson MB, Renna M, Carp SA, Franceschini MA, Boas DA, Cheng X. Choosing a camera and optimizing system parameters for speckle contrast optical spectroscopy. Sci Rep 2024;14:11915. PMCID: PMC11126420.
Robinson MB, Cheng TY, Renna M, Wu MM, Kim B, Cheng X, Boas DA, Franceschini MA, Carp SA. Comparing the performance potential of speckle contrast optical spectroscopy and diffuse correlation spectroscopy for cerebral blood flow monitoring using Monte Carlo simulations in realistic head geometries. Neurophoton 2024;11:015004. PMCID:
Hakon J, Quattromani MJ, Sjölund C, Talhada D, Kim B, Moyanova S, Mastroiacovo F, Di Menna L, Olsson R, Englund E, Nicoletti F, Ruscher L, Bauer AQ, Wieloch T. Inhibiting metabotropic glutamate receptor 5 after stroke restores brain function and connectivity. Brain 2024;147:186-200. PMCID: PMC10766240.
Wang X, Padawer-Curry JA, Bice AR, Kim B, Rosenthal ZP, Lee J-M, Goyal MS, Macauley SL, Bauer AQ. Spatiotemporal relationships between neuronal, metabolic, and hemodynamic signals in the awake and anesthetized mouse brain. Cell Reports 2024;43:114723. doi.org/10.1016/j.celrep.2024.114723.
Adams JW, Kirsch D, Calderazzo SM, …, McKee A, Stein TD. Substantia nigra pathology, contact sports play, and Parkinsonism in chronic traumatic encephalopathy. JAMA Neurol 2024;81:916-924. PMCID: PMC11250391 (available on 2025-07-15).
Segars KL, Azzari N, Cole M, Kushimi L, Rapaka S, Rich CB, Trinkaus-Randall VE. Diverse calcium signaling profiles regulate migratory behavior in avascular wound healing and aberrant signal hierarchy occurs early in diabetes. Am J Physiol Cell Physiol 2024 Aug 12. doi: 10.1152/ajpcell.00249.2024
Lteif D, Sreerama S, Bargal SA, Plummer BA, Au R, Kolachalama VB. Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease. Hum Brain Mapp 2024;45:e26707. PMCID: PMC11128757.
2023
S. Zhang, G. Grifno, R. Passaro, K. Regan, S. Zheng, M. Hadzipasic, R. Banerji, L. O’Connor, V. Chu, S. Y. Kim, J. Yang, L. Shi, K. Karrobi, D. Roblyer, M. Grinstaff, H. T. Nia, “In vivo multiscale measurements of solid stresses in tumors reveal scale-dependent stress transmission”, Nature Biomedical Engineering, 2023
Ariane Garrett, Byungchan Kim, Edbert J. Sie, Nil Z. Gurel, Francesco Marsili, David A. Boas, and Darren Roblyer, “Simultaneous photoplethysmography and blood flow measurements towards the estimation of blood pressure using speckle contrast optical spectroscopy,” Biomed. Opt. Express 14, 1594-1607 (2023)
Xu, K., Diaz, A. A., Duan, F., Lee, M., Xiao, X., Liu, H., Liu, G., Cho, M. H., Gower, A. C., Alekseyev, Y. O., Spira, A., Aberle, D. R., Washko, G. R., Billatos, E., Lenburg, M. E., & DECAMP investigators (2023). Bronchial gene expression alterations associated with radiological bronchiectasis. The European respiratory journal, 61(1), 2200120. https://doi.org/10.1183/13993003.00120-2022
Moore, J., Ewoldt, J., Venturini, G., Pereira, A. C., Padilha, K., Lawton, M., Lin, W., Goel, R., Luptak, I., Perissi, V., Seidman, C. E., Seidman, J., Chin, M. T., Chen, C., & Emili, A. (2023). Multi-Omics Profiling of Hypertrophic Cardiomyopathy Reveals Altered Mechanisms in Mitochondrial Dynamics and Excitation-Contraction Coupling. International journal of molecular sciences, 24(5), 4724. https://doi.org/10.3390/ijms24054724
Dimovasili, C., Fair, A. E., Garza, I. R., Batterman, K. V., Mortazavi, F., Moore, T. L., & Rosene, D. L. (2023). Aging compromises oligodendrocyte precursor cell maturation and efficient remyelination in the monkey brain. GeroScience, 45(1), 249–264. https://doi.org/10.1007/s11357-022-00621-4
Swain, D. L., & Eliassi-Rad, B. (2023). Five-year outcomes of selective laser trabeculoplasty: A retrospective study. Frontiers in medicine, 9, 1039195. https://doi.org/10.3389/fmed.2022.1039195
Katari, P., Wang, J., Frame, A., Bagley, S., & Cook, Q. (2023). Evaluating the Impact of Food Insecurity on Food Allergy Quality of Life in an Urban Pediatric Population. The Journal of Allergy and Clinical Immunology, 151(2), AB97.
Sebastian Scheich, Jiji Chen, Jiamin Liu, Frank Schnutgen, Julius C. Enssle, Michele Ceribelli, Craig J. Thomas, Jaewoo Choi, Vivian Morris, Tony Hsiao, Hang Nguyen, Boya Wang, Arnold Bolomsky, James D. Phelan, Sean Corcoran, Henning Urlaub, Ryan M. Young, Bjorn Haupl, George W. Wright, Da Wei Huang, Yanlong Ji, Xin Yu, Weihong Xu, Yandan Yang, Hong Zhao, Jagan Muppidi, Kuan-Ting Pan, Thomas Oellerich, Louis M. Staudt; Targeting N-linked Glycosylation for the Therapy of Aggressive Lymphomas. Cancer Discov 2023; https://doi.org/10.1158/2159-8290.CD-22-1401
Abo, K.M., Kane, J., Druckenbrod, R.C. et al. Intraoperative hypovolemia as a possible precipitating factor for pituitary apoplexy: a case report. J Med Case Reports 17, 53 (2023). https://doi.org/10.1186/s13256-022-03738-4
Kirsch D, Shah A, Dixon E, Kelley H, Cherry JD, Xia W, Daley S, Aytan N, Cormier K, Kubilus C, Mathias R, Alvarez VE, Huber BR, McKee AC, Stein TD. Vascular injury is associated with repetitive head impacts and tau pathology in chronic traumatic encephalopathy. J Neuropathol Exp Neurol. 2023 Jan 6:nlac122. doi: 10.1093/jnen/nlac122. Epub ahead of print. PMID: 36617181.
Swain, D and Eliassi-Rad, B “Five-year outcomes of selective laser trabeculoplasty: A retrospective study” Front. Med. 2023; 9. https://doi.org/10.3389/fmed.2022.1039195
2022
Xu, K., Shi, X., Husted, C. et al. Smoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airways. Sci Rep 12, 18168 (2022). https://doi.org/10.1038/s41598-022-17832-6
Vanuytsel, K., Yeung, A. K., Dowrey, T. W., Murphy, G. J., & Belkina, A. C. (2022). CPHEN-013: Comprehensive phenotyping of hematopoietic stem and progenitor cells in the human fetal liver. Cytometry. Part A : the journal of the International Society for Analytical Cytology, 101(11), 903–908. https://doi.org/10.1002/cyto.a.24540
Li, H. S., Israni, D. V., Gagnon, K. A., Gan, K. A., Raymond, M. H., Sander, J. D., Roybal, K. T., Joung, J. K., Wong, W. W., & Khalil, A. S. (2022). Multidimensional control of therapeutic human cell function with synthetic gene circuits. Science (New York, N.Y.), 378(6625), 1227–1234. https://doi.org/10.1126/science.ade0156
Frame, A., Katari, P., Wang, J., Bagley, S., & Cook, Q. (2022). IMPACT OF ACCESS TO ALLERGEN-FREE FOOD OPTIONS THROUGH WIC ON FOOD ALLERGY-RELATED QUALITY OF LIFE. Annals of Allergy, Asthma & Immunology: Official Publication of the American College of Allergy, Asthma, & Immunology, 129(5), S64.
Rathod, S., Kolus, R., Kim, B. et al. A case of abnormally dilated and tortuous arc of Buhler and pancreaticoduodenal arteries in the absence of celiac trunk stenosis. Surg Radiol Anat 44, 1343–1347 (2022). https://doi.org/10.1007/s00276-022-03018-2
Muus C, Luecken MD, Eraslan G, Xu K, et al; NHLBI LungMap consortium; human cell atlas lung biological network. single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics. Nat Med. 2021 Mar;27(3):546-559. doi: 10.1038/s41591-020-01227-z. Epub 2021 Mar 2. PMID: 33654293
Billatos E, Ash SY, Duan F, Xu K, et al. Distinguishing smoking-related lung disease phenotypes via imaging and molecular features. Chest. 2021 Feb;159(2):549-563. doi: 10.1016/j.chest.2020.08.2115. Epub 2020 Sep 16. PMID: 32946850; PMCID: PMC8039011.
Sanders, N. L., Martin, I. M. C., Sharma, A., Jones, M. R., Quinton, L. J., Bosmann, M., & Mizgerd, J. P. (2022). Neutrophil Extracellular Traps as an Exacerbating Factor in Bacterial Pneumonia. Infection and immunity, 90(3), e0049121. https://doi.org/10.1128/IAI.00491-21
Xiao, R., Zeng, J., Bressler, E.M. et al. Synthesis of bioactive (1→6)-β-glucose branched poly-amido-saccharides that stimulate and induce M1 polarization in macrophages. Nat Commun 13, 4661 (2022). https://doi.org/10.1038/s41467-022-32346-5
Sabatelle, R. C., Liu, R., Hung, Y. P., Bressler, E., Neal, E. J., Martin, A., Ekladious, I., Grinstaff, M. W., & Colson, Y. L. (2022). Ultra-high drug loading improves nanoparticle efficacy against peritoneal mesothelioma. Biomaterials, 285, 121534. https://doi.org/10.1016/j.biomaterials.2022.121534
Frame, A. A., Nist, K. M., Kim, K., Kuwabara, J. T., & Wainford, R. D. (2022). Natriuresis During an Acute Intravenous Sodium Chloride Infusion in Conscious Sprague Dawley Rats Is Mediated by a Blood Pressure-Independent α1-Adrenoceptor-Mediated Mechanism. Frontiers in physiology, 12, 784957. https://doi.org/10.3389/fphys.2021.784957
Xu K, Diaz Alejandro, Duan Fenghai et al. Bronchial gene expression alterations associated with radiographic bronchiectasis. Eur Respir J. 2022 Oct 13:2200120. doi: 10.1183/13993003.00120-2022. Epub ahead of print. PMID: 36229050.
Moore, J., Hekman, R., Blum, B. C., Lawton, M., Lehoux, S., Stachler, M., Pleskow, D., Sawhney, M. S., Cummings, R. D., Emili, A., & Qureshi, A. (2022). Pilot Study Showing Feasibility of Phosphoproteomic Profiling of Pathway-Level Molecular Alterations in Barrett’s Esophagus. Genes, 13(7), 1215. https://doi.org/10.3390/genes13071215
Xu K, Shi Xingyi, Husted Chris et al. Smoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airways. Sci Rep. 2022 Oct 28;12(1):18168. doi: 10.1038/s41598-022-17832-6. PMID: 36307504; PMCID: PMC9615627.
Minnig, M. A., Blasio, A., Ferragud, A., Sami, Y. N., Erhard, E. E., Clark, R. H., DiLeo, A., Giuliano, C., Everitt, B. J., Cottone, P., & Sabino, V. (2022). Pituitary adenylate cyclase-activating polypeptide type 1 receptor within the nucleus accumbens core mediates excessive alcohol drinking in alcohol-preferring rats. Neuropharmacology, 212, 109063. https://doi.org/10.1016/j.neuropharm.2022.109063
Darp, R., Vittoria, M.A., Ganem, N.J., Craig, C.J. . (2022). Oncogenic BRAF induces whole-genome doubling through suppression of cytokinesis. Nature Communications, 4109(13), N/A.
Vittoria, M. A., Kingston, N., Kotynkova, K., Xia, E., Hong, R., Huang, L., McDonald, S., Tilston-Lunel, A., Campbell, J. D., Lang, D., Xu, X., Ceol, C. J., Varelas, X., Ganem, N. J.. (2022). Inactivation of the Hippo Tumor Suppressor Pathway Promotes Melanoma. . Nature Communications, 3732(13), NA.
Segars, K. L., Azzari, N. A., Gomez, S., Rich, C. B., & Trinkaus-Randall, V. (2022). Live-Cell Imaging of Intact Ex Vivo Globes Using a Novel 3D Printed Holder. Journal of visualized experiments : JoVE, (188), 10.3791/64510. https://doi.org/10.3791/64510
de la Asunción-Nadal, V., Franco, C., Veciana, A., Ning, S., Terzopoulou, A., Sevim, S., Chen, X. Z., Gong, D., Cai, J., Wendel-Garcia, P. D., Jurado-Sánchez, B., Escarpa, A., Puigmartí-Luis, J., & Pané, S. (2022). MoSBOTs: Magnetically Driven Biotemplated MoS2 -Based Microrobots for Biomedical Applications. Small (Weinheim an der Bergstrasse, Germany), 18(33), e2203821. https://doi.org/10.1002/smll.202203821
Berical A, Lee RE, Lu J, Beermann ML, Le Suer JA, Mithal A, Thomas D, Ranallo N, Peasley M, Stuffer A, Bukis K, Seymour R, Harrington J, Coote K, Valley H, Hurley K, McNally P, Mostoslavsky G, Mahoney J, Randell SH, Hawkins FJ. A multimodal iPSC platform for cystic fibrosis drug testing. Nat Commun. 2022 Jul 29;13(1):4270. doi: 10.1038/s41467-022-31854-8.PMID: 35906215
Sosnowik S, Swain DL, Fan S, Toris C, Gong H. Morphological changes to Schlemm’s canal and the distal aqueous outflow pathway in monkey eyes with laser-induced ocular hypertension. Exp Eye Res. 2022; 219:109030. doi: 10.1016/j.exer.2022.109030
Ren R, Humphrey AA, Swain DL, Gong H. Relationships between intraocular pressure, effective filtration area, and morphological changes in the trabecular meshwork of steroid-induced ocular hypertensive mouse eyes. Int J Mol Sci. 2022; 23(2):854. doi: 10.3390/ijms23020854
Swain DL, Lee HJ. Descemet’s membrane injury due to shock-wave trauma. Am J Ophthalmol Case Rep. 2022; 27:101652. doi: 10.1016/j.ajoc.2022.101652
Ning, S., Jorfi, M., Patel, S. R., Kim, D. Y., & Tanzi, R. E. (2022). Neurotechnological Approaches to the Diagnosis and Treatment of Alzheimer’s Disease. Frontiers in neuroscience, 16, 854992. https://doi.org/10.3389/fnins.2022.854992
Shi L, Herrmann J, Bou Jawde S, Bates JHT, Nia HT, Suki B. Modeling the influence of gravity and the mechanical properties of elastin and collagen fibers on alveolar and lung pressure-volume curves. Sci Rep. 2022 Jul 19;12(1):12280. doi: 10.1038/s41598-022-16650-0. PMID: 35853981; PMCID: PMC9294799.
Bray, D., Hook, H., Zhao, R., Keenan, J. L., Penvose, A., Osayame, Y., Mohaghegh, N., Chen, X., Parameswaran, S., Kottyan, L. C., Weirauch, M. T., & Siggers, T. (2022). CASCADE: high-throughput characterization of regulatory complex binding altered by non-coding variants. Cell genomics, 2(2), 100098. https://doi.org/10.1016/j.xgen.2022.100098
Segars, K. L., Azzari, N. A., Gomez, S., Machen, C., Rich, C. B., & Trinkaus-Randall, V. (2022). Age Dependent Changes in Corneal Epithelial Cell Signaling. Frontiers in cell and developmental biology, 10, 886721. https://doi.org/10.3389/fcell.2022.886721
C. McKee A, Kirsch D. Traumatic Brain Injury and Chronic Traumatic Encephalopathy. In: Halter JB, Ouslander JG, Studenski S, High KP, Asthana S, Supiano MA, Ritchie CS, Schmader K. eds. Hazzard’s Geriatric Medicine and Gerontology, 8e. McGraw Hill; 2022.
Swain, D. L., Yasmin, S., Fernandes, B., Lamaj, G., Su, Y., & Gong, H. (2022). Schlemm’s Canal Endothelium Cellular Connectivity in Giant Vacuole and Pore Formation in Different Flow-type Areas: A Serial Block-Face Scanning Electron Microscopy Study. Frontiers in cell and developmental biology, 10, 867376. https://doi.org/10.3389/fcell.2022.867376
Abo, K. M., Sainz de Aja, J., Lindstrom-Vautrin, J., Alysandratos, K. D., Richards, A., Garcia-de-Alba, C., Huang, J., Hix, O. T., Werder, R. B., Bullitt, E., Hinds, A., Falconer, I., Villacorta-Martin, C., Jaenisch, R., Kim, C. F., Kotton, D. N., & Wilson, A. A. (2022). Air-liquid interface culture promotes maturation and allows environmental exposure of pluripotent stem cell-derived alveolar epithelium. JCI insight, 7(6), e155589. https://doi.org/10.1172/jci.insight.155589
Marte, M. J., Carpenter, E., Falconer, I. B., Scimeca, M., Abdollahi, F., Peñaloza, C., & Kiran, S. (2022). LEX-BADAT: Language EXperience in Bilinguals With and Without Aphasia DATaset. Frontiers in psychology, 13, 875928. https://doi.org/10.3389/fpsyg.2022.875928
Finkelstein, A. B., Leblanc, H., Cole, R. H., Gallerani, T., Vieira, A., Zaki, Y., & Ramirez, S. (2022). Social reactivation of fear engrams enhances memory recall. Proceedings of the National Academy of Sciences of the United States of America, 119(12), e2114230119. https://doi.org/10.1073/pnas.2114230119
Joyce, M., Marshall, L. G., Banik, S. L., Wang, J., Xiao, D., Bunce, J. G., & Barbas, H. (2022). Pathways for Memory, Cognition and Emotional Context: Hippocampal, Subgenual Area 25, and Amygdalar Axons Show Unique Interactions in the Primate Thalamic Reuniens Nucleus. The Journal of neuroscience : the official journal of the Society for Neuroscience, 42(6), 1068–1089. https://doi.org/10.1523/JNEUROSCI.1724-21.2021
2021
Minnig, M. A., Park, T., Echeveste Sanchez, M., Cottone, P., & Sabino, V. (2021). Viral-Mediated Knockdown of Nucleus Accumbens Shell PAC1 Receptor Promotes Excessive Alcohol Drinking in Alcohol-Preferring Rats. Frontiers in behavioral neuroscience, 15, 787362. https://doi.org/10.3389/fnbeh.2021.787362
Batterman, K. V., Cabrera, P. E., Moore, T. L., & Rosene, D. L. (2021). T Cells Actively Infiltrate the White Matter of the Aging Monkey Brain in Relation to Increased Microglial Reactivity and Cognitive Decline. Frontiers in immunology, 12, 607691. https://doi.org/10.3389/fimmu.2021.607691
Moore, J., & Emili, A. (2021). Mass-Spectrometry-Based Functional Proteomic and Phosphoproteomic Technologies and Their Application for Analyzing Ex Vivo and In Vitro Models of Hypertrophic Cardiomyopathy. International journal of molecular sciences, 22(24), 13644. https://doi.org/10.3390/ijms222413644
Qi C, Feng I, Costa AR, Pinto-Costa R, Neil JE, Caluseriu O, Li D, Ganetzky RD, Andersen CB, Fagerberg C, Kansen LK, Bupp C, Muraresku CC, Ruan X, Kang B, Hu K, Zhong R, Brites P, Bhoj EJ, Hill RS, Falk MJ, Hakonarson H, Kahle KT, Sousa MM, Walsh CA, & Zhang X. Variants in ADD1 cause intellectual disability, corpus callosum dysgenesis, and ventriculomegaly in humans. Genet Med. 2021;S1098-3600(21)04742-0. https://doi.org/10.1016/j.gim.2021.09.014
Merritt C, Chun EM, Fattah RJ, Silva LM, Ma QQ, Moayeri M, Paliga D, Neumann S, Heumann R, Leppla SH, Bugge TH. Imaging of anthrax intoxication in mice reveals shared and individual functions of surface receptors CMG-2 and TEM-8 in cellular toxin entry. J Biol Chem. 2021 Dec 3:101467. doi: 10.1016/j.jbc.2021.101467. Epub ahead of print. PMID: 34871548.
Li W, Wang Z, Syed S, Lyu C, Lincoln S, O’Neil J, Nguyen AD, Feng I, Young MW. Chronic Social Isolation Signals Starvation in the Drosophila Brain and Reduces Sleep. Nature (2021). https://doi.org/10.1038/s41586-021-03837-0
Swain, D.L., Le, T.D., Yasmin, S., Fernandes, B., Lamaj, G., Dasgupta, I.,Gao, Y., Gong, H., Morphological factors associated with giant vacuoles with I-pores in Schlemm’s canal endothelial cells of human eyes: A serial block-face scanning electron microscopy study, Experimental Eye Research (2021), doi: https://doi.org/10.1016/j.exer.2021.108488.
Calderazzo, S. M., Busch, S. E., Moore, T. L., Rosene, D. L., & Medalla, M. (2021). Distribution and overlap of entorhinal, premotor, and amygdalar connections in the monkey anterior cingulate cortex. The Journal of comparative neurology, 529(4), 885–904. https://doi.org/10.1002/cne.24986
Kim, J., Lee, M., Baldwin-Hunter, B., Solfisburg, Q. S., Lightdale, C. J., Korem, T., Hur, C., & Abrams, J. A. (2021). Minimal Associations between Short-Term Dietary Intake and Salivary Microbiome Composition. Microorganisms, 9(8), 1739. https://doi.org/10.3390/microorganisms9081739
Sun, Y. L., Hurley, K., Villacorta-Martin, C., Huang, J., Hinds, A., Gopalan, K., Caballero, I. S., Russo, S. J., Kitzmiller, J. A., Whitsett, J. A., Beers, M. F., & Kotton, D. N. (2021). Heterogeneity in Human iPSC-derived Alveolar Epithelial Type II Cells Revealed with ABCA3/SFTPC Reporters. American journal of respiratory cell and molecular biology, 10.1165/rcmb.2020-0259OC. Advance online publication. https://doi.org/10.1165/rcmb.2020-0259OC
Lee, Y. K., Segars, K. L., & Trinkaus-Randall, V. (2021). Multiple Imaging Modalities for Cell-Cell Communication via Calcium Mobilizations in Corneal Epithelial Cells. Methods in molecular biology (Clifton, N.J.), 2346, 11–20. https://doi.org/10.1007/7651_2020_329
Quinton RJ, DiDomizio A, Vittoria MA, Kotýnková K, Ticas CJ, Patel S, Koga Y, Vakhshoorzadeh J, Hermance N, Kuroda TS, Parulekar N, Taylor AM, Manning AL, Campbell JD, Ganem NJ.Nature. 2021 Feb;590(7846):492-497. doi: 10.1038/s41586-020-03133-3. Epub 2021 Jan 27.PMID: 33505027
Mithal, A., Hume, A. J., Lindstrom-Vautrin, J., Villacorta-Martin, C., Olejnik, J., Bullitt, E., Hinds, A., Mühlberger, E., & Mostoslavsky, G. (2021). Human Pluripotent Stem Cell-Derived Intestinal Organoids Model SARS-CoV-2 Infection Revealing a Common Epithelial Inflammatory Response. Stem cell reports, 16(4), 940–953. https://doi.org/10.1016/j.stemcr.2021.02.019
Hekman, R. M., Hume, A. J., Goel, R. K., Abo, K. M., Huang, J., Blum, B. C., Werder, R. B., Suder, E. L., Paul, I., Phanse, S., Youssef, A., Alysandratos, K. D., Padhorny, D., Ojha, S., Mora-Martin, A., Kretov, D., Ash, P., Verma, M., Zhao, J., Patten, J. J., … Emili, A. (2021). Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2. Molecular cell, 81(1), 212. https://doi.org/10.1016/j.molcel.2020.12.028
Rhodes, G., Segars, K. L., Lee, Y. K., Hutcheon, A. E. K., Rich, C. B., & Trinkaus-Randall, V. (2021). Pannexin1: Role as a Sensor to Injury Is Attenuated in Pretype 2 Corneal Diabetic Epithelium. Analytical cellular pathology (Amsterdam), 2021, 4793338. https://doi.org/10.1155/2021/4793338
Sonnenberg, A. H., Taylor, E., Mondoñedo, J. R., Jawde, S. B., Amin, S. D., Song, J., Grinstaff, M. W., & Suki, B. (2021). Breath Hold Facilitates Targeted Deposition of Aerosolized Droplets in a 3D Printed Bifurcating Airway Tree. Annals of biomedical engineering, 49(2), 812–821. https://doi.org/10.1007/s10439-020-02623-9
Ramineni, A., Roberts, E. A., Vora, M., Mahboobi, S. K., & Nozari, A. (2021). Anesthesia Considerations in Neurological Emergencies. Neurologic clinics, 39(2), 319–332. https://doi.org/10.1016/j.ncl.2021.01.007
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2018
Vittoria MA, Shenk EM, O’Rourke KP, Bolgioni AF, Lim S, Kacprzak V, Quinton RJ, Ganem NJ. 2018. A genome-wide miRNA screen identifies regulators of tetraploid cell proliferation. Mol Biol Cell 29(13):1682-1692.
Bolgioni, A. F., Vittoria, M. A., & Ganem, N. J. (2018). Long-term Live-cell Imaging to Assess Cell Fate in Response to Paclitaxel. Journal of visualized experiments : JoVE, (135), 57383. https://doi.org/10.3791/57383
Vittoria, M. A., Shenk, E. M., O’Rourke, K. P., Bolgioni, A. F., Lim, S., Kacprzak, V., Quinton, R. J., & Ganem, N. J. (2018). A genome-wide microRNA screen identifies regulators of tetraploid cell proliferation. Molecular biology of the cell, 29(13), 1682–1692. https://doi.org/10.1091/mbc.E18-02-0141
Bolgioni, A. F., Vittoria, M. A., & Ganem, N. J. (2018). Long-term Live-cell Imaging to Assess Cell Fate in Response to Paclitaxel. Journal of visualized experiments : JoVE, (135), 57383. https://doi.org/10.3791/57383
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Kantrowitz J, Sinjab A, Xu L, McDowell TL, Sivakumar S, Lang W, Nunomura-Nakamura S, Fukuoka J, Nemer G, Darwiche N, Chami H, Tfayli A, Wistuba II, Scheet P, Fujimoto J, Spira AE, Kadara H. 2018. Genome-Wide Gene Expression Changes in the Normal-Appearing Airway during the Evolution of Smoking-Associated Lung Adenocarcinoma. Cancer Prev Res (Phila). 11(4):237-248.
Khalil A, Dekmak B, Boulos F, Kantrowitz J, Spira A, Fujimoto J, Kadara H, El-Hachem N, Nemer G. 2018. Transcriptomic Alterations in Lung Adenocarcinoma Unveil New Mechanisms Targeted by the TBX2 Subfamily of Tumor Suppressor Genes. Front Oncol. 8:482.
Wellman TJ, Mondoñedo JR, Davis GS, Bates JHT, Suki B. 2018. Topographic distribution of idiopathic pulmonary fibrosis: a hybrid physics- and agent-based model. Physiol. Meas. 39(6):064007.
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McCauley, K. B., Alysandratos, K. D., Jacob, A., Hawkins, F., Caballero, I. S., Vedaie, M., Yang, W., Slovik, K. J., Morley, M., Carraro, G., Kook, S., Guttentag, S. H., Stripp, B. R., Morrisey, E. E., & Kotton, D. N. (2018). Single-Cell Transcriptomic Profiling of Pluripotent Stem Cell-Derived SCGB3A2+ Airway Epithelium. Stem cell reports, 10(5), 1579–1595. https://doi.org/10.1016/j.stemcr.2018.03.013
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Wutz, A., Loonis, R., Roy, J. E., Donoghue, J. A., & Miller, E. K. (2018). Different Levels of Category Abstraction by Different Dynamics in Different Prefrontal Areas. Neuron, 97(3), 716–726.e8. https://doi.org/10.1016/j.neuron.2018.01.009
Bastos, A. M., Loonis, R., Kornblith, S., Lundqvist, M., & Miller, E. K. (2018). Laminar recordings in frontal cortex suggest distinct layers for maintenance and control of working memory. Proceedings of the National Academy of Sciences of the United States of America, 115(5), 1117–1122. https://doi.org/10.1073/pnas.1710323115
Francis, I. P., Islam, E. A., Gower, A. C., Shaik-Dasthagirisaheb, Y. B., Gray-Owen, S. D., & Wetzler, L. M. (2018). Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases. BMC genomics, 19(1), 627. https://doi.org/10.1186/s12864-018-5000-7
Islam, E. A., Anipindi, V. C., Francis, I., Shaik-Dasthagirisaheb, Y., Xu, S., Leung, N., Sintsova, A., Amin, M., Kaushic, C., Wetzler, L. M., & Gray-Owen, S. D. (2018). Specific Binding to Differentially Expressed Human Carcinoembryonic Antigen-Related Cell Adhesion Molecules Determines the Outcome of Neisseria gonorrhoeae Infections along the Female Reproductive Tract. Infection and immunity, 86(8), e00092-18. https://doi.org/10.1128/IAI.00092-18
Mondoñedo, J. R., McNeil, J. S., Herrmann, J., Simon, B. A., & Kaczka, D. W. (2018). Targeted Versus Continuous Delivery of Volatile Anesthetics During Cholinergic Bronchoconstriction. Journal of engineering and science in medical diagnostics and therapy, 1(3), 0310031–03100310. https://doi.org/10.1115/1.4040001
Wellman, T. J., Mondoñedo, J. R., Davis, G. S., Bates, J., & Suki, B. (2018). Topographic distribution of idiopathic pulmonary fibrosis: a hybrid physics- and agent-based model. Physiological measurement, 39(6), 064007. https://doi.org/10.1088/1361-6579/aaca86
Zikopoulos, B., Liu, X., Tepe, J., Trutzer, I., John, Y. J., & Barbas, H. (2018). Opposite development of short- and long-range anterior cingulate pathways in autism. Acta neuropathologica, 136(5), 759–778. https://doi.org/10.1007/s00401-018-1904-1
Pittman-Polletta, B. R., Quach, A., Mohammed, A. I., Romano, M., Kondabolu, K., Kopell, N. J., Han, X., & McCarthy, M. M. (2018). Striatal cholinergic receptor activation causes a rapid, selective and state-dependent rise in cortico-striatal β activity. The European journal of neuroscience, 48(8), 2857–2868. https://doi.org/10.1111/ejn.13906
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Thomas, A. S., Ghulam-Smith, M., & Sagar, M. (2018). Neutralization and beyond: Antibodies and HIV-1 acquisition. Current Topics In Virology, 15, 73–86.
Vittoria, M. A., Shenk, E. M., O’Rourke, K. P., Bolgioni, A. F., Lim, S., Kacprzak, V., Quinton, R. J., & Ganem, N. J. (2018). A genome-wide microRNA screen identifies regulators of tetraploid cell proliferation. Molecular biology of the cell, 29(13), 1682–1692. https://doi.org/10.1091/mbc.E18-02-0141
Vittoria, M. A., Shenk, E. M., O’Rourke, K. P., Bolgioni, A. F., Lim, S., Kacprzak, V., Quinton, R. J., & Ganem, N. J. (2018). A genome-wide microRNA screen identifies regulators of tetraploid cell proliferation. Molecular biology of the cell, 29(13), 1682–1692. https://doi.org/10.1091/mbc.E18-02-0141
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2017
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Mondoñedo JR, Suki B. 2017. Predicting Structure-Function Relations and Survival following Surgical and Bronchoscopic Lung Volume Reduction Treatment of Emphysema. PLoS Comput Biol 13(2): e1005282.
Suki B, Hu Y, Murata N, Imsirovic J, Mondoñedo JR, de Oliveira CLN, Schaible N, Allen PG, Krishnan R, Bartolák-Suki E. 2017. A microfluidic chamber-based approach to map the shear moduli of vascular cells and other soft materials. Sci Rep 7(1):2305.
Barrios J, Patel KR, Aven L, Achey R, Minns MS, Lee Y, Trinkaus-Randall VE, Ai X. 2017. Early life allergen-induced mucus overproduction requires augmented neural stimulation of pulmonary neuroendocrine cell secretion. FASEB J. 31(9):4117-4128.
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Mahdaviani, K., Benador, I. Y., Su, S., Gharakhanian, R. A., Stiles, L., Trudeau, K. M., Cardamone, M., Enríquez-Zarralanga, V., Ritou, E., Aprahamian, T., Oliveira, M. F., Corkey, B. E., Perissi, V., Liesa, M., & Shirihai, O. S. (2017). Mfn2 deletion in brown adipose tissue protects from insulin resistance and impairs thermogenesis. EMBO reports, 18(7), 1123–1138. https://doi.org/10.15252/embr.201643827
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Hawkins, F., Kramer, P., Jacob, A., Driver, I., Thomas, D. C., McCauley, K. B., Skvir, N., Crane, A. M., Kurmann, A. A., Hollenberg, A. N., Nguyen, S., Wong, B. G., Khalil, A. S., Huang, S. X., Guttentag, S., Rock, J. R., Shannon, J. M., Davis, B. R., & Kotton, D. N. (2017). Prospective isolation of NKX2-1-expressing human lung progenitors derived from pluripotent stem cells. The Journal of clinical investigation, 127(6), 2277–2294. https://doi.org/10.1172/JCI89950
McCauley, K. B., Hawkins, F., Serra, M., Thomas, D. C., Jacob, A., & Kotton, D. N. (2017). Efficient Derivation of Functional Human Airway Epithelium from Pluripotent Stem Cells via Temporal Regulation of Wnt Signaling. Cell stem cell, 20(6), 844–857.e6. https://doi.org/10.1016/j.stem.2017.03.001
Mujahid, N., Liang, Y., Murakami, R., Choi, H. G., Dobry, A. S., Wang, J., Suita, Y., Weng, Q. Y., Allouche, J., Kemeny, L. V., Hermann, A. L., Roider, E. M., Gray, N. S., & Fisher, D. E. (2017). A UV-Independent Topical Small-Molecule Approach for Melanin Production in Human Skin. Cell reports, 19(11), 2177–2184. https://doi.org/10.1016/j.celrep.2017.05.042
Loonis, R. F., Brincat, S. L., Antzoulatos, E. G., & Miller, E. K. (2017). A Meta-Analysis Suggests Different Neural Correlates for Implicit and Explicit Learning. Neuron, 96(2), 521–534.e7. https://doi.org/10.1016/j.neuron.2017.09.032
Suki, B., Hu, Y., Murata, N., Imsirovic, J., Mondoñedo, J. R., de Oliveira, C., Schaible, N., Allen, P. G., Krishnan, R., & Bartolák-Suki, E. (2017). A microfluidic chamber-based approach to map the shear moduli of vascular cells and other soft materials. Scientific reports, 7(1), 2305. https://doi.org/10.1038/s41598-017-02659-3
Mondoñedo, J. R., & Suki, B. (2017). Predicting Structure-Function Relations and Survival following Surgical and Bronchoscopic Lung Volume Reduction Treatment of Emphysema. PLoS computational biology, 13(2), e1005282. https://doi.org/10.1371/journal.pcbi.1005282
Mondoñedo, J. R., Herrmann, J., McNeil, J. S., & Kaczka, D. W. (2017). Comparison of pneumotachography and anemometery for flow measurement during mechanical ventilation with volatile anesthetics. Journal of clinical monitoring and computing, 31(6), 1263–1271. https://doi.org/10.1007/s10877-016-9956-z
Howe, W. M., Gritton, H. J., Lusk, N. A., Roberts, E. A., Hetrick, V. L., Berke, J. D., & Sarter, M. (2017). Acetylcholine Release in Prefrontal Cortex Promotes Gamma Oscillations and Theta-Gamma Coupling during Cue Detection. The Journal of neuroscience : the official journal of the Society for Neuroscience, 37(12), 3215–3230. https://doi.org/10.1523/JNEUROSCI.2737-16.2017
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Mehta, A. K., Hua, K., Whipple, W., Nguyen, M. T., Liu, C. T., Haybaeck, J., Weidhaas, J., Settleman, J., & Singh, A. (2017). Regulation of autophagy, NF-κB signaling, and cell viability by miR-124 in KRAS mutant mesenchymal-like NSCLC cells. Science signaling, 10(496), eaam6291. https://doi.org/10.1126/scisignal.aam6291
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2016
Hsieh T, Vaickus MH, Stein TD, et al. The Role of Substance P in Pulmonary Clearance of Bacteria in Comparative Injury Models. Am J Pathol. 2016;186(12):3236-3245. doi:10.1016/j.ajpath.2016.08.014.
Lim S, Quinton RJ, Ganem NJ. 2016. Nuclear envelope rupture drives genome instability in cancer. Mol Biol Cell 27(21):3210-3213.
Gong H, Swain DL. 2016. The histopathological changes in the trabecular outflow pathway and their possible effects on aqueous outflow in eyes with primary open-angle glaucoma. In: Knepper PA, Samples JR (eds). Glaucoma Research and Clinical Advances 2016 to 2018. Kugler, 17-40.
Valero-Munoz M, Li S, Wilson RM, Boldbaatar B, Iglarz M, Sam F. 2016. Dual Endothelin-A/Endothelin-B Receptor Blockade and Cardiac Remodeling in Heart Failure With Preserved Ejection Fraction. Circ Heart Fail. 9(11):e003381.
Burgess CR, Ramesh RN, Sugden AU, Levandowski KM, Minnig MA, Fenselau H, Lowell BB, Andermann ML. 2016. Hunger-Dependent Enhancement of Food Cue Responses in Mouse Postrhinal Cortex and Lateral Amygdala. Neuron. 91(5):1154-1169.
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Spill, F., Weinstein, Z. B., Irani Shemirani, A., Ho, N., Desai, D., & Zaman, M. H. (2016). Controlling uncertainty in aptamer selection. Proceedings of the National Academy of Sciences of the United States of America, 113(43), 12076–12081. https://doi.org/10.1073/pnas.1605086113
Zhuo, J. M., Tseng, H. A., Desai, M., Bucklin, M. E., Mohammed, A. I., Robinson, N. T., Boyden, E. S., Rangel, L. M., Jasanoff, A. P., Gritton, H. J., & Han, X. (2016). Young adult born neurons enhance hippocampal dependent performance via influences on bilateral networks. eLife, 5, e22429. https://doi.org/10.7554/eLife.22429
Kondabolu, K., Roberts, E. A., Bucklin, M., McCarthy, M. M., Kopell, N., & Han, X. (2016). Striatal cholinergic interneurons generate beta and gamma oscillations in the corticostriatal circuit and produce motor deficits. Proceedings of the National Academy of Sciences of the United States of America, 113(22), E3159–E3168. https://doi.org/10.1073/pnas.1605658113
Mohammed, A. I., Gritton, H. J., Tseng, H. A., Bucklin, M. E., Yao, Z., & Han, X. (2016). An integrative approach for analyzing hundreds of neurons in task performing mice using wide-field calcium imaging. Scientific reports, 6, 20986. https://doi.org/10.1038/srep20986
Roberts, E. A., Troiano, C., & Spiegel, J. H. (2016). Standardization of Guidelines for Patient Photograph Deidentification. Annals of plastic surgery, 76(6), 611–614. https://doi.org/10.1097/SAP.0000000000000817
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Scordi-Bello, I., Kirsch, D., & Hammers, J. (2016). Fatal Pulmonary Thromboembolism in Patients with Diabetic Ketoacidosis: A Seven-Case Series and Review of the Literature. Academic forensic pathology, 6(2), 198–205. https://doi.org/10.23907/2016.022
2015
Miller EJ, Calamaras T, Elezaby A, et al. Partial Liver Kinase B1 (LKB1) Deficiency Promotes Diastolic Dysfunction, De Novo Systolic Dysfunction, Apoptosis, and Mitochondrial Dysfunction With Dietary Metabolic Challenge. J Am Heart Assoc. 2015;5(1). doi:10.1161/JAHA.115.002277.
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Swain DL, Ho J, Lai J, Gong H. 2015. Shorter scleral spur in eyes with primary open-angle glaucoma. Invest Ophthalmol Vis Sci. 56(3):1638-48.
Imsirovic J, Wellman TJ, Mondoñedo JR, Bartolák-Suki E, Suki B. 2015. Design of a novel equi-biaxial stretcher for live cellular and subcellular imaging. PLoS One 10(10):e0140283.
Mahdaviani, K., Benador, I., & Shirihai, O. (2015). Assessment of Brown Adipocyte Thermogenic Function by High-throughput Respirometry. Bio-protocol, 5(21), e1641. https://doi.org/10.21769/BioProtoc.1641
Mondoñedo, J. R., McNeil, J. S., Amin, S. D., Herrmann, J., Simon, B. A., & Kaczka, D. W. (2015). Volatile Anesthetics and the Treatment of Severe Bronchospasm: A Concept of Targeted Delivery. Drug discovery today. Disease models, 15, 43–50. https://doi.org/10.1016/j.ddmod.2014.02.004
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2014
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3. Baugh CM, Kiernan PT, Kroshus E, Daneshvar DH, Montenigro PH, McKee AC, Stern RA. Frequency of Head-Impact-Related Outcomes by Position in NCAA Division I Collegiate Football Players. J Neurotrauma. 2014 Aug 26.
4. Baugh CM, Kroshus E, Daneshvar DH, Stern RA. Perceived Coach Support and Concussion Symptom-Reporting: Differences between Freshmen and Non-Freshmen College Football Players. J Law Med Ethics. 2014 Sep; 42(3):314-22.
5. Bickart KC, Brickhouse M, Negreira A, Sapolsky D, Barrett LF, Dickerson BC. Atrophy in distinct corticolimbic networks in frontotemporal dementia relates to social impairments measured using the Social Impairment Rating Scale. J Neurol Neurosurg Psychiatry. 2014 Apr; 85(4):438-48.
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