Publicly-available data sets

CBMS data posted to the Pride Archive:

  1. Khatri, K.; Klein, J. A.; White, M. R.; Grant, O. C.; Leymarie, N.; Woods, R. J.; Hartshorn, K. L.; Zaia, J. Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions. Mol Cell Proteomics 2016, 15, 1895-912. Pubmed Link
    Pride Link
  2. Klein, J. A.; Meng, L.; Zaia, J. Deep sequencing of complex proteoglycans: a novel strategy for high coverage and site-specific identification of glycosaminoglycan-linked peptides. Mol Cell Proteomics 2018, 10.1074/mcp.RA118.000766. Pubmed Link
    Pride Link
  3. Hogan, J. D.; Klein, J. A.; Wu, J.; Chopra, P.; Boons, G. J.; Carvalho, L.; Lin, C.; Zaia, J. Software for peak finding and elemental composition assignment for glycosaminoglycan tandem mass spectra. Mol Cell Proteomics 2018, 17, 1448-1456. Pubmed Link
    Pride Link
  4. Raghunathan, R.; Polinski, N. K.; Klein, J. A.; Hogan, J. D.; Shao, C.; Khatri, K.; Leon, D.; McComb, M. E.; Manfredsson, F. P.; Sortwell, C. E.; Zaia, J. Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway. Molecular & Cellular Proteomics 2018, 17, 1778-1787. Pubmed Link
    Pride Link
  5. Klein, J.; Zaia, J. Relative Retention Time Estimation Improves N-Glycopeptide Identifications By LC-MS/MS. J Proteome Res 2020, doi: 10.1021/acs.jproteome.0c00051. Pubmed Link
    Pride Link
  6. Sethi, M. K.; Downs, M.; Zaia, J. Serial in-solution digestion protocol for mass spectrometry-based glycomics and proteomics analysis. Mol Omics 2020, doi: 10.1039/d0mo00019a. Pubmed Link
    Pride Link
  7. Chang, D.; Hackett, W. E.; Zhong, L.; Wan, X.-F.; Zaia, J. Measuring site-specific glycosylation similarity between influenza A virus variants with statistical certainty. bioRxiv 2020, , 2020.03.13.991380. Pubmed Link