CPC Tools are the software packages developed for proteomics data analysis and made freely available to the scientific community. Below are the tools currently available.
STRAP (Software Tool for Rapid Annotation of Proteins) saves you time by automatically annotating a protein list with information that helps you meaningfully interpret your mass spectrometry data.
STRAP PTM (Software Tool for Rapid Annotation of Proteins: Post-Translational Modification edition) helps you recognize global, differential post-translational modifications in large proteomics data sets.
BUPID (Boston University Protein Identifier) Top-Down provides you with a series of tools to analyze top-down MS/MS spectra obtained with a number of fragmentation methods.