Publications: September – November 2023

Ahlness EA, Molloy-Paolillo BK, Brunner J, Cutrona SL, Kim B, Matteau E, Rinne ST, Walton E, Wong E, Sayre G. Impacts of an Electronic Health Record Transition on Veterans Health Administration Health Professions Trainee Experience. J Gen Intern Med. 2023 Oct 05. PMID: 37798576

Banerji R, Grifno GN, Shi L, Smolen D, LeBourdais R, Muhvich J, Eberman C, Hiller BE, Lee J, Regan K, Zheng S, Zhang S, Jiang J, Raslan AA, Breda JC, Pihl R, Traber K, Mazzilli S, Ligresti G, Mizgerd JP, Suki B, Nia HT. Crystal ribcage: a platform for probing real-time lung function at cellular resolution. Nat Methods. 2023 Sep 14.View Related Profiles. PMID: 37710017

Barnett ED, Wheelock AB, MacLeod WB, McCarthy AE, Walker PF, Coyle CM, Greenaway CA, Castelli F, López-Vélez R, Gobbi FG, Trigo E, Grobusch MP, Gautret P, Hamer DH, Kuhn S, Stauffer WM. Infections with long latency in international refugees, immigrants, and migrants seen at GeoSentinel sites, 2016-2018. Travel Med Infect Dis 2023;56:102653.

Bongomin F, Ekeng BE, Kwizera R, Salmanton-García J, Kibone W, van Rhijn N, Govender NP, Meya DB, Osaigbovo II, Hamer DH, Oladele R, Denning DW. Fungal diseases in Africa: closing the gaps in diagnosis and treatment through implementation research and advocacy. J Med Mycology 2023;33:101438.

Bosch NA, Law AC, Walkey AJ. Immortal Time Bias Possibly Affecting Fludrocortisone-Hydrocortisone Findings-Reply. JAMA Intern Med. 2023 Oct 01; 183(10):1178-1179.View Related Profiles. PMID: 37669033

Brunner J, Anderson E, Mohr DC, Cohen-Bearak A, Rinne ST. From “Local Control” to “Dependency”: Transitions to Single-Vendor Integrated Electronic Health Record Systems and Their Implications for the EHR Workforce. J Gen Intern Med. 2023 Oct 05.View Related Profiles. PMID: 37798579

Coelho T, Marques W, Dasgupta NR, Chao CC, Parman Y, França MC, Guo YC, Wixner J, Ro LS, Calandra CR, Kowacs PA, Berk JL, Obici L, Barroso FA, Weiler M, Conceição I, Jung SW, Buchele G, Brambatti M, Chen J, Hughes SG, Schneider E, Viney NJ, Masri A, Gertz MR, Ando Y, Gillmore JD, Khella S, Dyck PJB, Waddington Cruz M. Eplontersen for Hereditary Transthyretin Amyloidosis With Polyneuropathy. JAMA. 2023 Sep 28. PMID: 37768671; PMCID: PMC10540057; DOI: 10.1001/jama.2023.18688;

Cogan AM, Rinne ST, Weiner M, Simon S, Davila J, Yano EM. Using Research to Transform Electronic Health Record Modernization: Advancing a VA Partnered Research Agenda to Increase Research Impacts. J Gen Intern Med. 2023 Oct 05. PMID: 37798575

Dinh J, Hinkle CF, Law AC, Walkey AJ, Bosch NA. Effect of Respiratory Viral Panel Adoption on Antibiotic Use in Ventilated Patients. Ann Am Thorac Soc. 2023 Sep 25.View Related Profiles. PMID: 37748086

Fang F, Zhou L, Perng W, Marsit CJ, Knight AK, Cardenas A, Aung MT, Hivert MF, Aris IM, Goodrich JM, Smith AK, Gaylord A, Fry RC, Oken E, O’Connor G, Ruden DM, Trasande L, Herbstman JB, Camargo CA, Bush NR, Dunlop AL, Dabelea DM, Karagas MR, Breton CV, Ober C, Everson TM, Page GP, Ladd-Acosta C. Evaluation of pediatric epigenetic clocks across multiple tissues. Clin Epigenetics. 2023 Sep 02; 15(1):142. PMID: 37660147; PMCID: PMC10475199; DOI: 10.1186/s13148-023-01552-3;

Feeney ME, Steiling K. Successful management of suspected propofol dependence with phenobarbital in an adult patient with COVID-19. Am J Health Syst Pharm. 2023 Sep 22; 80(19):1309-1314. PMID: 37368792

Garfield JL, Piper ME, Bauer SE, Kathuria H, Eakin MN. The Greatest LGBTQ+ Health Issue of All Time: Commercial Tobacco. Ann Am Thorac Soc. 2023 Sep; 20(9):1227-1228. PMID: 37278727

Herriges MJ, Yampolskaya M, Thapa BR, Lindstrom-Vautrin J, Wang F, Huang J, Na CL, Ma L, Montminy MM, Bawa P, Villacorta-Martin C, Mehta P, Kotton DN. Durable alveolar engraftment of PSC-derived lung epithelial cells into immunocompetent mice. Cell Stem Cell. 2023 Sep 07; 30(9):1217-1234.e7.View Related Profiles. PMID: 37625412; PMCID: PMC10529386; DOI: 10.1016/j.stem.2023.07.016;

Hoffman SE, Dowrey TW, Villacorta Martin C, Bi K, Titchen B, Johri S, DelloStritto L, Patel M, Mackichan C, Inga S, Chen J, Grimaldi G, Napolitano S, Wakiro I, Wu J, Yeung J, Rotem A, Sicinska E, Shannon E, Clancy T, Wang J, Denning S, Brais L, Besson NR, Pfaff KL, Huang Y, Kao KZ, Rodig S, Hornick JL, Vigneau S, Park J, Kulke MH, Chan J, Van Allen EM, Murphy GJ. Intertumoral lineage diversity and immunosuppressive transcriptional programs in well-differentiated gastroenteropancreatic neuroendocrine tumors. Sci Adv. 2023 Sep 29; 9(39):eadd9668. PMID: 37756410; PMCID: PMC10530100; DOI: 10.1126/sciadv.add9668;

Huits R, Wallender E, Angelo KM, Libman M, Hamer DH. A Zebra Among the Horses: Clinical Implications of Malaria in the United States. Ann Intern Med. 2023 Sep; 176(9):1269-1270. PMID: 37487212

John CC, Hamer DH. Post-Discharge Mortality in Recently Hospitalized African Children: A Hidden Crisis. Am J Trop Med Hyg. 2023 Sep 06; 109(3):495-496. PMID: 37640287; PMCID: PMC10484279; DOI: 10.4269/ajtmh.23-0525;

Klever AM, Alexander KA, Almeida D, Anderson MZ, Ball RL, Beamer G, Boggiatto P, Buikstra JE, Chandler B, Claeys TA, Concha AE, Converse PJ, Derbyshire KM, Dobos KM, Dupnik KM, Endsley JJ, Endsley MA, Fennelly K, Franco-Paredes C, Hagge DA, Hall-Stoodley L, Hayes D, Hirschfeld K, Hofman CA, Honda JR, Hull NM, Kramnik I, Lacourciere K, Lahiri R, Lamont EA, Larsen MH, Lemaire T, Lesellier S, Lee NR, Lowry CA, Mahfooz NS, McMichael TM, Merling MR, Miller MA, Nagajyothi JF, Nelson E, Nuermberger EL, Pena MT, Perea C, Podell BK, Pyle CJ, Quinn FD, Rajaram MVS, Mejia OR, Rothoff M, Sago SA, Salvador LCM, Simonson AW, Spencer JS, Sreevatsan S, Subbian S, Sunstrum J, Tobin DM, Vijayan KKV, Wright CTO, Robinson RT. The Many Hosts of Mycobacteria 9 (MHM9): A conference report. Tuberculosis (Edinb). 2023 Sep; 142:102377. PMID: 37531864; PMCID: PMC10529179; DOI: 10.1016/j.tube.2023.102377;

Lang AE, Kathuria H, Braillon A, Ewart G, Dagli E, Stepp EL, Galiatsatos P, Deepak J, Jordt SE, Hayes D. England Is Handing Out E-Cigarettes: Is the ‘Swap to Stop’ Tobacco Control Scheme Harm Reduction or Harm Production? Am J Respir Crit Care Med. 2023 Sep 08. PMID: 37682082

Liang J, Ligresti G. Aging Delays Lung Repair: Insights from Omics Analysis in Mice with Pulmonary Fibrosis. Am J Respir Cell Mol Biol. 2023 Oct; 69(4):376-377. PMID: 37437301; PMCID: PMC10557920; DOI: 10.1165/rcmb.2023-0171ED;

Lui JK, Gillmeyer KR, Sangani RA, Smyth RJ, Gopal DM, Trojanowski MA, Bujor AM, Soylemez Wiener R, LaValley MP, Klings ES. A Clinical Decision Tool for Risk Stratifying Patients with Systemic Sclerosis-Related Pulmonary Hypertension. Lung. 2023 Nov 13. PMID: 37957388; DOI: 10.1007/s00408-023-00646-2;

Luo F, Zhu M, Wilson KC. Adult Interstitial Lung Abnormalities: The New Frontier of Pulmonary Fibrosis. Am J Respir Crit Care Med. 2023 Sep 15; 208(6):651-652. PMID: 37552023; PMCID: PMC10515573; DOI: 10.1164/rccm.202307-1287ED;

Lyon De Ana C, Shenoy AT, Barker KA, Arafa EI, Etesami NS, Korkmaz FT, Soucy AM, Breen MP, Martin IMC, Tilton BR, Devarajan P, Crossland NA, Pihl RMF, Goltry WN, Belkina AC, Jones MR, Quinton LJ, Mizgerd JP. GL7 ligand expression defines a novel subset of CD4+ TRM cells in lungs recovered from pneumococcus. Mucosal Immunol. 2023 Sep 07.View Related Profiles. PMID: 37604254

Ma L, Thapa BR, Le Suer JA, Tilston-Lünel A, Herriges MJ, Berical A, Beermann ML, Wang F, Bawa PS, Kohn A, Ysasi AB, Kiyokawa H, Matte TM, Randell SH, Varelas X, Hawkins FJ, Kotton DN. Airway stem cell reconstitution by the transplantation of primary or pluripotent stem cell-derived basal cells. Cell Stem Cell. 2023 Sep 07; 30(9):1199-1216.e7.View Related Profiles. PMID: 37625411; PMCID: PMC10528754; DOI: 10.1016/j.stem.2023.07.014;

Mahvi DA, Korunes-Miller J, Bordeianu C, Chu NQ, Geller AD, Sabatelle R, Berry S, Hung YP, Colson YL, Grinstaff MW, Raut CP. High dose, dual-release polymeric films for extended surgical bed paclitaxel delivery. J Control Release. 2023 Sep 28. PMID: 37776906

McGee JE, Kirsch JR, Kenney D, Chavez E, Shih TY, Douam F, Wong WW, Grinstaff MW. Complete substitution with modified nucleotides suppresses the early interferon response and increases the potency of self-amplifying RNA. bioRxiv. 2023 Sep 17.View Related Profiles. PMID: 37745375; PMCID: PMC10516017; DOI: 10.1101/2023.09.15.557994;

Miake-Lye IM, Cogan AM, Mak S, Brunner J, Rinne S, Brayton CE, Krones A, Ross TE, Burton JT, Weiner M. Transitioning from One Electronic Health Record to Another: A Systematic Review. J Gen Intern Med. 2023 Oct 05. PMID: 37798580

Moll M, Peljto AL, Kim JS, Xu H, Debban CL, Chen X, Menon A, Putman RK, Ghosh AJ, Saferali A, Nishino M, Hatabu H, Hobbs BD, Hecker J, McDermott G, Sparks JA, Wain LV, Allen RJ, Tobin MD, Raby BA, Chun S, Silverman EK, Zamora AC, Ortega VE, Garcia CK, Barr RG, Bleecker ER, Meyers DA, Kaner RJ, Rich SS, Manichaikul A, Rotter JI, Dupuis J, O’Connor GT, Fingerlin TE, Hunninghake GM, Schwartz DA, Cho MH. A Polygenic Risk Score for Idiopathic Pulmonary Fibrosis and Interstitial Lung Abnormalities. Am J Respir Crit Care Med. 2023 Oct 01; 208(7):791-801.View Related Profiles. PMID: 37523715; PMCID: PMC10563194; DOI: 10.1164/rccm.202212-2257OC;

Molloy-Paolillo B, Mohr D, Levy DR, Cutrona SL, Anderson E, Rucci J, Helfrich C, Sayre G, Rinne ST. Assessing Electronic Health Record (EHR) Use during a Major EHR Transition: An Innovative Mixed Methods Approach. J Gen Intern Med. 2023 Oct 05.View Related Profiles. PMID: 37798584

Obici L, Ajroud-Driss S, Lin KP, Berk JL, Gillmore JD, Kale P, Koike H, Danese D, Aldinc E, Chen C, Vest J, Adams D. Impact of Vutrisiran on Quality of Life and Physical Function in Patients with Hereditary Transthyretin-Mediated Amyloidosis with Polyneuropathy. Neurol Ther. 2023 Oct; 12(5):1759-1775. PMID: 37523143; PMCID: PMC10444729; DOI: 10.1007/s40120-023-00522-4;

Pontarollo G, Kollar B, Mann A, Khuu MP, Kiouptsi K, Bayer F, Brandão I, Zinina VV, Hahlbrock J, Malinarich F, Mimmler M, Bhushan S, Marini F, Ruf W, Belheouane M, Baines JF, Endres K, Reba SM, Raker VK, Deppermann C, Welsch C, Bosmann M, Soshnikova N, Chassaing B, Bergentall M, Sommer F, Bäckhed F, Reinhardt C. Author Correction: Commensal bacteria weaken the intestinal barrier by suppressing epithelial neuropilin-1 and Hedgehog signaling. Nat Metab. 2023 Sep; 5(9):1639. PMID: 37697057; PMCID: PMC10513928; DOI: 10.1038/s42255-023-00901-z;

Recto K, Kachroo P, Huan T, Van Den Berg D, Lee GY, Bui H, Lee DH, Gereige J, Yao C, Hwang SJ, Joehanes R, Weiss ST, O’Connor GT, Levy D, DeMeo DL. Epigenome-wide DNA methylation association study of circulating IgE levels identifies novel targets for asthma. EBioMedicine. 2023 Sep; 95:104758.View Related Profiles. PMID: 37598461; PMCID: PMC10462855; DOI: 10.1016/j.ebiom.2023.104758;

Riehl DR, Sharma A, Roewe J, Murke F, Ruppert C, Eming SA, Bopp T, Kleinert H, Radsak MP, Colucci G, Subramaniam S, Reinhardt C, Giebel B, Prinz I, Guenther A, Strand D, Gunzer M, Waisman A, Ward PA, Ruf W, Schäfer K, Bosmann M. Externalized histones fuel pulmonary fibrosis via a platelet-macrophage circuit of TGFß1 and IL-27. Proc Natl Acad Sci U S A. 2023 Oct 03; 120(40):e2215421120. PMID: 37756334; PMCID: PMC10556605; DOI: 10.1073/pnas.2215421120;

Rinne ST, Brunner J, Mohr DC, Bearak AC, Anderson E. Practices Supporting Electronic Health Record Transitions: Lessons from Four US Healthcare Systems. J Gen Intern Med. 2023 Oct 05.View Related Profiles. PMID: 37798573

Rucci JM, Ball S, Brunner J, Moldestad M, Cutrona SL, Sayre G, Rinne S. “Like One Long Battle:” Employee Perspectives of the Simultaneous Impact of COVID-19 and an Electronic Health Record Transition. J Gen Intern Med. 2023 Oct 05.View Related Profiles. PMID: 37798583

Shrine N, Izquierdo AG, Chen J, Packer R, Hall RJ, Guyatt AL, Batini C, Thompson RJ, Pavuluri C, Malik V, Hobbs BD, Moll M, Kim W, Tal-Singer R, Bakke P, Fawcett KA, John C, Coley K, Piga NN, Pozarickij A, Lin K, Millwood IY, Chen Z, Li L, Wijnant SRA, Lahousse L, Brusselle G, Uitterlinden AG, Manichaikul A, Oelsner EC, Rich SS, Barr RG, Kerr SM, Vitart V, Brown MR, Wielscher M, Imboden M, Jeong A, Bartz TM, Gharib SA, Flexeder C, Karrasch S, Gieger C, Peters A, Stubbe B, Hu X, Ortega VE, Meyers DA, Bleecker ER, Gabriel SB, Gupta N, Smith AV, Luan J, Zhao JH, Hansen AF, Langhammer A, Willer C, Bhatta L, Porteous D, Smith BH, Campbell A, Sofer T, Lee J, Daviglus ML, Yu B, Lim E, Xu H, O’Connor GT, Thareja G, Albagha OME, Suhre K, Granell R, Faquih TO, Hiemstra PS, Slats AM, Mullin BH, Hui J, James A, Beilby J, Patasova K, Hysi P, Koskela JT, Wyss AB, Jin J, Sikdar S, Lee M, May-Wilson S, Pirastu N, Kentistou KA, Joshi PK, Timmers PRHJ, Williams AT, Free RC, Wang X, Morrison JL, Gilliland FD, Chen Z, Wang CA, Foong RE, Harris SE, Taylor A, Redmond P, Cook JP, Mahajan A, Lind L, Palviainen T, Lehtimäki T, Raitakari OT, Kaprio J, Rantanen T, Pietiläinen KH, Cox SR, Pennell CE, Hall GL, Gauderman WJ, Brightling C, Wilson JF, Vasankari T, Laitinen T, Salomaa V, Mook-Kanamori DO, Timpson NJ, Zeggini E, Dupuis J, Hayward C, Brumpton B, Langenberg C, Weiss S, Homuth G, Schmidt CO, Probst-Hensch N, Jarvelin MR, Morrison AC, Polasek O, Rudan I, Lee JH, Sayers I, Rawlins EL, Dudbridge F, Silverman EK, Strachan DP, Walters RG, Morris AP, London SJ, Cho MH, Wain LV, Hall IP, Tobin MD. Author Correction: Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk. Nat Genet. 2023 Oct; 55(10):1778-1779.View Related Profiles. PMID: 37749248; PMCID: PMC10562210; DOI: 10.1038/s41588-023-01531-7;

Sridhar S, Kang JS, Madzorera I, Zulu E, Makasa J, Cross SB, Hamer DH, Undernutrition in older children and adolescents in peri-urban Zambia. Front Pub Health 2023;11:1251768.

Stephenson N, Forno E, Laguna TA, Lovinsky-Desir S, Moore PE, Sheares BJ, Kazmerski TM, Udoko MN, Lypson ML, Harding LRW, Wilkes DS, Adair DJ, Afolabi F, Balasubramaniam V, Ale GJB, Castner LM, Ghera P, Heras A, Jordan K, Ly NP, Martinez-Fernandez TM, Mishra PE, Narang I, Palla JB, Rivera-Sanchez YM, Tapia IE, Toprak D, Torres-Silva CA, Cohen RT. Diversity, Equity, and Inclusion in the Pediatric Pulmonary Workforce: An Official American Thoracic Society Workshop Report. Ann Am Thorac Soc. 2023 Oct; 20(10):1373-1388. PMID: 37772940; PMCID: PMC10559131; DOI: 10.1513/AnnalsATS.202306-583ST;

Turcinovic J, Kuhfeldt K, Sullivan M, Landaverde L, Platt JT, Alekseyev Y, Doucette-Stamm L, Hamer DH, Klapperich C, Landsberg HE, Connor JH. Transmission dynamics and rare clustered transmission within an urban university population before widespread vaccination. J Infect Dis published on-line October 2023.

Vakhshoorzadeh J, Lui JK, Sangani RA, Trojanowski MA, Bujor AM, LaValley MP, Klings ES. Emphysema and interstitial lung disease in systemic sclerosis-related pulmonary hypertension. Respir Med. 2023 Sep; 216:107333.View Related Profiles. PMID: 37336329; DOI: 10.1016/j.rmed.2023.107333;

Walkey A, Bosch NA, Teja B. Response. Chest. 2023 Sep; 164(3):e87-e88.View Related Profiles. PMID: 37689481

Weiner M, Rinne ST, Haggstrom DA, Yano EM. Advancing the Science of Electronic Health Record Transitions. J Gen Intern Med. 2023 Oct 05. PMID: 37798585

Werder RB, Berthiaume KA, Merritt C, Gallagher M, Villacorta-Martin C, Wang F, Bawa P, Malik V, Lyons SM, Basil MC, Morrisey EE, Kotton DN, Zhou X, Cho MH, Wilson AA. The COPD GWAS gene ADGRG6 instructs function and injury response in human iPSC-derived type II alveolar epithelial cells. Am J Hum Genet. 2023 Oct 05; 110(10):1735-1749.View Related Profiles. PMID: 37734371

Yabaji SM, Rukhlenko OS, Chatterjee S, Bhattacharya B, Wood E, Kasaikina M, Kholodenko BN, Gimelbrant AA, Kramnik I. Cell state transition analysis identifies interventions that improve control of Mycobacterium tuberculosis infection by susceptible macrophages. Sci Adv. 2023 Sep 29; 9(39):eadh4119.View Related Profiles. PMID: 37756395; PMCID: PMC10530096; DOI: 10.1126/sciadv.adh4119;

Yampolskaya M, Herriges MJ, Ikonomou L, Kotton DN, Mehta P. scTOP: physics-inspired order parameters for cellular identification and visualization. Development. 2023 Sep 26.View Related Profiles. PMID: 37756586

Yanagawa J, Tran LM, Salehi-Rad R, Lim RJ, Dumitras C, Fung E, Wallace WD, Prosper AE, Fishbein G, Shea C, Hong R, Kahangi B, Deng JJ, Gower AC, Liu B, Campbell JD, Mazzilli SA, Beane JE, Kadara H, Lenburg ME, Spira AE, Aberle DR, Krysan K, Dubinett SM. Single-Cell Characterization of Pulmonary Nodules Implicates Suppression of Immunosurveillance across Early Stages of Lung Adenocarcinoma. Cancer Res. 2023 Oct 02; 83(19):3305-3319.View Related Profiles. PMID: 37477508

Yeung AK, Villacorta-Martin C, Lindstrom-Vautrin J, Belkina AC, Vanuytsel K, Dowrey TW, Ysasi AB, Bawa P, Wang F, Vrbanac V, Mostoslavsky G, Balazs A, Murphy GJ. De-novo hematopoiesis from the fetal lung. Blood Adv. 2023 Sep 20.View Related Profiles. PMID: 37729429; DOI: 10.1182/bloodadvances.2022008347;

Zhao C, Wang W, Bai Y, Amonkar G, Mou H, Olejnik J, Hume AJ, Mühlberger E, Fang Y, Que J, Fearns R, Ai X, Lerou PH. Age-related STAT3 signaling regulates severity of respiratory syncytial viral infection in human bronchial epithelial cells. bioRxiv. 2023 Sep 21.View Related Profiles. PMID: 37781574; PMCID: PMC10541147; DOI: 10.1101/2023.09.20.558606;