Publications: November 2022 – January 2023

Altman MC, Kattan M, O’Connor GT, Murphy RC, Whalen E, LeBeau P, Calatroni A, Gill MA, Gruchalla RS, Liu AH, Lovinsky-Desir S, Pongracic JA, Kercsmar CM, Khurana Hershey GK, Zoratti EM, Teach SJ, Bacharier LB, Wheatley LM, Sigelman SM, Gergen PJ, Togias A, Busse WW, Gern JE, Jackson DJ; National Institute of Allergy and Infectious Disease’s Inner City Asthma Consortium. Associations between outdoor air pollutants and non-viral asthma exacerbations and airway inflammatory responses in children and adolescents living in urban areas in the USA: a retrospective secondary analysis. Lancet Planet Health. 2023 Jan;7(1):e33-e44. doi: 10.1016/S2542-5196(22)00302-3. PMID: 36608946.

Alysandratos KD, Garcia-de-Alba C, Yao C, Pessina P, Huang J, Villacorta-Martin C, Hix OT, Minakin K, Burgess CL, Bawa P, Murthy A, Konda B, Beers MF, Stripp BR, Kim CF, Kotton DN. Culture impact on the transcriptomic programs of primary and iPSC-derived human alveolar type 2 cells. JCI Insight. 2023 Jan 10;8(1):e158937. doi: 10.1172/jci.insight.158937. PMID: 36454643.

Bosch NA, Law AC, Vail EA, Gillmeyer KR, Gershengorn HB, Wunsch H, Walkey AJ. Inhaled Nitric Oxide vs Epoprostenol During Acute Respiratory Failure: An Observational Target Trial Emulation. Chest. 2022 Dec;162(6):1287-1296. doi: 10.1016/j.chest.2022.08.001. Epub 2022 Aug 8. PMID: 35952768.

Bosch NA, Law AC, Walkey AJ. Phenobarbital for Severe Alcohol Withdrawal Syndrome: A Multicenter Retrospective Cohort Study. Am J Respir Crit Care Med. 2022 Nov 1;206(9):1171-1174. doi: 10.1164/rccm.202203-0466LE. PMID: 35833888.

Burgess CL, Huang J, Bawa P, Alysandratos KD, Minakin K, Morley MP, Babu A, Villacorta-Martin C, Hinds A, Thapa BR, Wang F, Matschulat AM, Morrisey EE, Varelas X, Kotton DN. Generation of human alveolar epithelial type I cells from pluripotent stem cells. bioRxiv [Preprint]. 2023 Jan 20:2023.01.19.524655. doi: 10.1101/2023.01.19.524655. PMID: 36711505; PMCID: PMC9882278.

Chen DY, Chin CV, Kenney D, Tavares AH, Khan N, Conway HL, Liu G, Choudhary MC, Gertje HP, O’Connell AK, Adams S, Kotton DN, Herrmann A, Ensser A, Connor JH, Bosmann M, Li JZ, Gack MU, Baker SC, Kirchdoerfer RN, Kataria Y, Crossland NA, Douam F, Saeed M. Spike and nsp6 are key determinants of SARS-CoV-2 Omicron BA.1 attenuation. Nature. 2023 Jan 11. doi: 10.1038/s41586-023-05697-2. Epub ahead of print. PMID: 36630998.

Chung J, Vig V, Sun X, Han X, O’Connor GT, Chen X, DeAngelis MM, Farrer LA, Subramanian ML. Genome-Wide Pleiotropy Study Identifies Association of PDGFB with Age-Related Macular Degeneration and COVID-19 Infection Outcomes. J Clin Med. 2022 Dec 23;12(1):109. doi: 10.3390/jcm12010109. PMID: 36614910; PMCID: PMC9821609.

Cohen RT, Klings ES. Systemic Steroids and the Risk of Vasoocclusive Events in Patients with Sickle Cell Disease. Ann Am Thorac Soc. 2023 Jan;20(1):18-20. doi: 10.1513/AnnalsATS.202207-627PS. PMID: 36166277; PMCID: PMC9819271.

Cozier YC, Govender P, Berman JS. Obesity and Sarcoidosis Risk: An Index Under Suspicion. Chest. 2022 Nov;162(5):954-956. doi: 10.1016/j.chest.2022.07.019. PMID: 36344120.

Dapas M, Thompson EE, Wentworth-Sheilds W, Clay S, Visness CM, Calatroni A, Sordillo JE, Gold DR, Wood RA, Makhija M, Khurana Hershey GK, Sherenian MG, Gruchalla RS, Gill MA, Liu AH, Kim H, Kattan M, Bacharier LB, Rastogi D, Altman MC, Busse WW, Becker PM, Nicolae D, O’Connor GT, Gern JE, Jackson DJ, Ober C. Multi-omic association study identifies DNA methylation-mediated genotype and smoking exposure effects on lung function in children living in urban settings. PLoS Genet. 2023 Jan 13;19(1):e1010594. doi: 10.1371/journal.pgen.1010594. PMID: 36638096; PMCID: PMC9879483.

El-Adili F, Lui JK, Najem M, Farina G, Trojanowska M, Sam F, Bujor AM. Periostin overexpression in scleroderma cardiac tissue and its utility as a marker for disease complications. Arthritis Res Ther. 2022 Nov 11;24(1):251. doi: 10.1186/s13075-022-02943-2. Erratum in: Arthritis Res Ther. 2023 Jan 23;25(1):11. PMID: 36369212; PMCID: PMC9650849.

Garcia MA, Bosch NA, Peltan ID, Walkey AJ. Variation in Troponin I Measurement and the Cardiovascular Management Approach Following Elevated Troponin I Among Critically Ill Patients With Sepsis. Crit Care Explor. 2023 Jan 10;5(1):e0842. doi: 10.1097/CCE.0000000000000842. PMID: 36699250; PMCID: PMC9833455.

Gillmeyer KR, Johnson SW, Bolton RE, McCullough MB, Wiener RS. Organization of pulmonary hypertension care in non-expert care settings: Lessons learned from a multi-site study. Health Serv Res. 2022 Dec 14. doi: 10.1111/1475-6773.14114. Epub ahead of print. PMID: 36518045.

Gutierrez MJ, Nino G, Sun D, Restrepo-Gualteros S, Sadreameli SC, Fiorino EK, Wu E, Vece T, Hagood JS, Maglione PJ, Kurland G, Koumbourlis A, Sullivan KE. The lung in inborn errors of immunity: From clinical disease patterns to molecular pathogenesis. J Allergy Clin Immunol. 2022 Dec;150(6):1314-1324. doi: 10.1016/j.jaci.2022.08.024. Epub 2022 Oct 14. PMID: 36244852; PMCID: PMC9826631.

Hao D, Han G, Sinjab A, Gomez-Bolanos LI, Lazcano R, Serrano A, Hernandez SD, Dai E, Cao X, Hu J, Dang M, Wang R, Chu Y, Song X, Zhang J, Parra ER, Wargo JA, Swisher SG, Cascone T, Sepesi B, Futreal AP, Li M, Dubinett SM, Fujimoto J, Solis Soto LM, Wistuba II, Stevenson CS, Spira A, Shalapour S, Kadara H, Wang L. The Single-Cell Immunogenomic Landscape of B and Plasma Cells in Early-Stage Lung Adenocarcinoma. Cancer Discov. 2022 Nov 2;12(11):2626-2645. doi: 10.1158/2159-8290.CD-21-1658. PMID: 36098652; PMCID: PMC9633381.

Jiang W, Joehanes R, Levy D, O’Connor GT, Dupuis J. Assisted clustering of gene expression data using regulatory data from partially overlapping sets of individuals. BMC Genomics. 2022 Dec 10;23(1):819. doi: 10.1186/s12864-022-09026-1. PMID: 36496393; PMCID: PMC9734806.

Kaserman JE, Werder RB, Wang F, Matte T, Higgins MI, Dodge M, Lindstrom-Vautrin J, Bawa P, Hinds A, Bullitt E, Caballero IS, Shi X, Gerszten RE, Brunetti-Pierri N, Liesa M, Villacorta-Martin C, Hollenberg AN, Kotton DN, Wilson AA. Human iPSC-hepatocyte modeling of alpha-1 antitrypsin heterozygosity reveals metabolic dysregulation and cellular heterogeneity. Cell Rep. 2022 Dec 6;41(10):111775. doi: 10.1016/j.celrep.2022.111775. PMID: 36476855; PMCID: PMC9780780.

Kathuria H, Gunawan A, Spring M, Aijaz S, Cobb V, Fitzgerald C, Wakeman C, Howard J, Clancy M, Foreman AG, Truong V, Wong C, Steiling K, Lasser KE, Bulekova K, Wiener RS. Hospitalization as an opportunity to engage underserved individuals in shared decision-making for lung cancer screening: results from two randomized pilot trials. Cancer Causes Control. 2022 Nov;33(11):1373-1380. doi: 10.1007/s10552-022-01620-8. Epub 2022 Aug 23. PMID: 35997854.

Kearney C, Lesieur M, Bosch NA, Walkey AJ. Corticosteroid Uptake For COVID-19 After Publication of RECOVERY: A Difference in Difference Model. Ann Am Thorac Soc. 2022 Dec 16. doi: 10.1513/AnnalsATS.202208-715RL. Epub ahead of print. PMID: 36525470.

Kee J, Thudium S, Renner DM, Glastad K, Palozola K, Zhang Z, Li Y, Lan Y, Cesare J, Poleshko A, Kiseleva AA, Truitt R, Cardenas-Diaz FL, Zhang X, Xie X, Kotton DN, Alysandratos KD, Epstein JA, Shi PY, Yang W, Morrisey E, Garcia BA, Berger SL, Weiss SR, Korb E. Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature. 2023 Jan;613(7945):E5. doi: 10.1038/s41586-022-05631-y. Erratum for: Nature. 2022 Oct;610(7931):381-388. PMID: 36624294; PMCID: PMC9827436.

Krenzlin, V., Roewe, J., Strueve, M., Martínez-Negro, M., Sharma, A., Reinhardt, C., Morsbach, S., & Bosmann, M. (2022). Bacterial-Type Long-Chain Polyphosphates Bind Human Proteins in the Phosphatidylinositol Signaling Pathway. Thrombosis and haemostasis, 122(11), 1943–1947. h

Lee-Sarwar KA, Chen YC, Lasky-Su J, Kelly RS, Zeiger RS, O’Connor GT, Bacharier LB, Jia X, Beigelman A, Gold DR, Laranjo N, Bunyavanich S, Weiss ST, Litonjua AA, Brennan PJ. Early-life fecal metabolomics of food allergy. Allergy. 2023 Feb;78(2):512-521. doi: 10.1111/all.15602. Epub 2022 Dec 7. PMID: 36448508.

Li B, Gillmeyer KR, Molloy-Paolillo B, Vimalananda VG, Elwy AR, Wiener RS, Rinne ST. Scoping Review of Pulmonary Telemedicine Consults: Current Knowledge and Research Gaps. Ann Am Thorac Soc. 2022 Dec 9. doi: 10.1513/AnnalsATS.202205-404OC. Epub ahead of print. PMID: 36490386.

Liu A, Siddiqi N, Tapan U, Mak KS, Steiling KA, Suzuki K. Black Race Remains Associated with Lower Eligibility for Screening Using 2021 US Preventive Services Task Force Recommendations Among Lung Cancer Patients at an Urban Safety Net Hospital. J Racial Ethn Health Disparities. 2022 Nov 28. doi: 10.1007/s40615-022-01460-x. Epub ahead of print. PMID: 36441493.

Lopes LC, Zhang Y, Ross S, Fulone I, Zhu M, O’Brien KK, Pavalagantharajah S, Leone FT, Sachs DPL, Kathuria H, Murray RL, Zhang YQ. Varenicline for Tobacco-Dependent Adults Who Are Not Ready to Discontinue Use: A Systematic Review and Meta-Analysis. Ann Am Thorac Soc. 2022 Dec;19(12):2077-2086. doi: 10.1513/AnnalsATS.202110-1122OC. PMID: 36129426.

Lui JK, Duke JD, Russo JV, Kelm DJ, Hinkle LJ. Multisource feedback in health professions education. Clin Teach. 2022 Nov 29:e13555. doi: 10.1111/tct.13555. Online ahead of print. PMID: 36446412.

Lui JK, Sangani RA, Gillmeyer KR, Vakhshoorzadeh J, Trojanowski MA, Bujor AM, Gopal DM, Wiener RS, LaValley MP, Klings ES. Hemodynamic Response to Oral Vasodilator Therapy in Systemic Sclerosis-Related Pulmonary Hypertension. Cardiovasc Drugs Ther. 2023 Jan 6. doi: 10.1007/s10557-022-07420-1. Online ahead of print. PMID: 36607535.

Marmor, H. N., Deppen, S. A., Welty, V., Kammer, M. N., Godfrey, C. M., Patel, K., Maldonado, F., Chen, H., Starnes, S. L., Wilson, D. O., Billatos, E., & Grogan, E. L. (2022). Improving Lung Cancer Diagnosis with Computed Tomography Radiomics and Serum Histoplasmosis Testing. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, EPI-22-0532. Advance online publication.

Patchen BK, Balte P, Bartz TM, Barr RG, Fornage M, Graff M, Jacobs DR, Kalhan R, Lemaitre RN, O’Connor G, Psaty B, Seo J, Tsai MY, Wood AC, Xu H, Zhang J, Gharib SA, Manichaikul A, North K, Steffen LM, Dupuis J, Oelsner E, Hancock DB, Cassano PA. Investigating associations of omega-3 fatty acids, lung function decline, and airway obstruction. medRxiv [Preprint]. 2023 Jan 18:2023.01.18.23284671. doi: 10.1101/2023.01.18.23284671. PMID: 36711663; PMCID: PMC9882557.

Pradhan A, Che L, Ustiyan V, Reza AA, Pek NM, Zhang Y, Alber AB, Kalin TR, Wambach JA, Gu M, Kotton DN, Siefert ME, Ziady AG, Kalin TV, Kalinichenko VV. Novel FOXF1-Stabilizing Compound TanFe Stimulates Lung Angiogenesis in Alveolar Capillary Dysplasia. Am J Respir Crit Care Med. 2022 Dec 8. doi: 10.1164/rccm.202207-1332OC. Epub ahead of print. PMID: 36480964.

Roewe J, Walachowski S, Sharma A, Berthiaume KA, Reinhardt C, Bosmann M. Bacterial polyphosphates induce CXCL4 and synergize with complement anaphylatoxin C5a in lung injury. Front Immunol. 2022 Nov 3;13:980733. doi: 10.3389/fimmu.2022.980733. PMID: 36405694; PMCID: PMC9669059.

Rucci JM, Bosch NA, Peterson D, Walkey AJ. Estimating the Impact of COVID-19 on Invasive Mechanical Ventilation Trends in the United States. Ann Am Thorac Soc. 2022 Dec;19(12):2105-2108. doi: 10.1513/AnnalsATS.202205-467RL. PMID: 35857409; PMCID: PMC9743481.

Sangani RA, Lui JK, Gillmeyer KR, Trojanowski MA, Bujor AM, LaValley MP, Klings ES. Clinical characteristics and outcomes in pulmonary manifestations of systemic sclerosis: Contribution from pulmonary hypertension and interstitial lung disease severity. Pulm Circ. 2022 Oct 1;12(4):e12117. doi: 10.1002/pul2.12117. eCollection 2022 Oct. PMID: 36238967.

Subramaniam S, Kothari H, Bosmann M. Tissue factor in COVID-19-associated coagulopathy. Thromb Res. 2022 Dec;220:35-47. doi: 10.1016/j.thromres.2022.09.025. Epub 2022 Oct 1. PMID: 36265412; PMCID: PMC9525243.

Torchia JA, Tavares AH, Carstensen LS, Chen DY, Huang J, Xiao T, Mukherjee S, Reeves PM, Tu H, Sluder AE, Chen B, Kotton DN, Bowen RA, Saeed M, Poznansky MC, Freeman GJ. Optimized ACE2 decoys neutralize antibody-resistant SARS-CoV-2 variants through functional receptor mimicry and treat infection in vivo. Sci Adv. 2022 Dec 9;8(49):eabq6527. doi: 10.1126/sciadv.abq6527. Epub 2022 Dec 7. PMID: 36475798; PMCID: PMC9728973.

Walachowski S, Breyne K, Secher T, Cougoule C, Guzylack-Piriou L, Meyer E, Foucras G, Tabouret G. Oral supplementation with yeast β-glucans improves the resolution of Escherichia coli-associated inflammatory responses independently of monocyte/macrophage immune training. Front Immunol. 2022 Dec 20;13:1086413. doi: 10.3389/fimmu.2022.1086413. PMID: 36605196; PMCID: PMC9809295.

Xu K, Diaz AA, Duan F, Lee M, Xiao X, Liu H, Liu G, Cho MH, Gower AC, Alekseyev YO, Spira A, Aberle DR, Washko GR, Billatos E, Lenburg ME; DECAMP investigators. Bronchial gene expression alterations associated with radiological bronchiectasis. Eur Respir J. 2023 Jan 27;61(1):2200120. doi: 10.1183/13993003.00120-2022. PMID: 36229050; PMCID: PMC9881226.