{"id":16,"date":"2008-08-12T20:53:33","date_gmt":"2008-08-13T00:53:33","guid":{"rendered":"https:\/\/www.bumc.bu.edu\/pneumonia\/research\/links\/"},"modified":"2026-05-01T11:02:33","modified_gmt":"2026-05-01T15:02:33","slug":"links","status":"publish","type":"page","link":"https:\/\/www.bumc.bu.edu\/pneumonia\/research\/links\/","title":{"rendered":"Links"},"content":{"rendered":"<h4>Links to BU facilities and services:<\/h4>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/busm\/research\/cores\/the-laboratory-animal-science-center\/\">Animal Science Center<\/a><\/p>\n<p><a href=\"http:\/\/buasc.bu.edu\/\" target=\"_blank\" rel=\"noopener noreferrer\">AOps<\/a><\/p>\n<p><a href=\"https:\/\/www.bu.edu\/ehs\/ehs-topics\/about-bioraft\/\" target=\"_blank\" rel=\"noopener noreferrer\">BioRAFT<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/tech\/services\/teaching\/lms\/blackboard\/\" target=\"_blank\" rel=\"noopener noreferrer\">BU Blackboard<\/a><\/p>\n<p><a href=\"https:\/\/buprimo.hosted.exlibrisgroup.com\/primo-explore\/search?vid=BU&amp;lang=en_US\" target=\"_blank\" rel=\"noopener noreferrer\">BU e-journals<\/a><\/p>\n<p><a href=\"https:\/\/www.bu.edu\/tech\/services\/admin\/fin-hr-proc\/central\/\" target=\"_blank\" rel=\"noopener noreferrer\">BU Works<\/a><\/p>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/busm\/research\/cores\/\" target=\"_blank\" rel=\"noopener noreferrer\">BUMC Cores<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/cores\/cores\/cellular-imaging-core\/\" target=\"_blank\" rel=\"noopener noreferrer\">Cellular Imaging Core<\/a><\/p>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/busm\/research\/cores\/data-science-core-dsc\/\" target=\"_blank\" rel=\"noopener noreferrer\">Data Science Core<\/a><\/p>\n<p><a href=\"http:\/\/www.bumc.bu.edu\/eplsc\" target=\"_blank\" rel=\"noopener noreferrer\">Experimental Pathology Laboratory Service Core<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/cores\/flow-cytometry\/\" target=\"_blank\" rel=\"noopener noreferrer\">Flow Cytometry<\/a><\/p>\n<p><a href=\"https:\/\/www.bu.edu\/healthway\/\" target=\"_blank\" rel=\"noopener noreferrer\">Healthway<\/a><\/p>\n<p><a href=\"http:\/\/www.bumc.bu.edu\/inspir\/\" target=\"_blank\" rel=\"noopener noreferrer\">IACUC<\/a><\/p>\n<p><a href=\"https:\/\/bostonu.ilab.agilent.com\/account\/login\" target=\"_blank\" rel=\"noopener noreferrer\">iLabs<\/a><\/p>\n<p><a href=\"https:\/\/wwwapp.bumc.bu.edu\/CoreFund\/Authentication\/Login\/?ReturnUrl=%2FCoreFund%2FCoreFund\" target=\"_blank\" rel=\"noopener noreferrer\">iLabs &#8211; Add Funds link (for PIs)<\/a><\/p>\n<p><a href=\"https:\/\/inspir.bu.edu\/Login.jsp?logout=Yes&amp;s=1604761276448\" target=\"_blank\" rel=\"noopener noreferrer\">IRB<\/a><\/p>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/busm\/research\/cores\/microarray-resource-core-facility\/\" target=\"_blank\" rel=\"noopener noreferrer\">Microarray and Sequencing Core<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/tech\/support\/mybuworks\/\" target=\"_blank\" rel=\"noopener noreferrer\">MyBUWorks<\/a><\/p>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/pneumonia\/?page_id=998&amp;preview=true\">Onboarding<\/a><\/p>\n<p><a href=\"http:\/\/www.bumc.bu.edu\/pulmonarycenter\/\" target=\"_blank\" rel=\"noopener noreferrer\">Pulmonary Center<\/a><\/p>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/pulmonarycenter\/seminars\/research-in-progress\/\" target=\"_blank\" rel=\"noopener\">Research In Progress seminars<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/rims\/\" target=\"_blank\" rel=\"noopener noreferrer\">RIMS<\/a><\/p>\n<p><a href=\"https:\/\/www.bu.edu\/research\/ethics-compliance\/safety\/rohp\/rohp-requirements-for-medical-clearance-process\/\" target=\"_blank\" rel=\"noopener noreferrer\">ROHP<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/thebus\/\" target=\"_blank\" rel=\"noopener noreferrer\">Shuttle Bus between Medical and Charles River Campuses<\/a><\/p>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/busm\/research\/cores\/scscore\/\" target=\"_blank\" rel=\"noopener noreferrer\">Single Cell Sequencing Core<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/ctsi\/training-education\/seminars-and-workshops\/open-study-design-and-statistical-analysis-consultation\/\">Statistics consultation with CTSI<\/a><\/p>\n<p><a href=\"https:\/\/sites.bu.edu\/mssp-consulting\/\" target=\"_blank\" rel=\"noopener noreferrer\">Stats and Machine Learning consults with CAS-Math<\/a><\/p>\n<p><a href=\"http:\/\/www.bu.edu\/webmail\/\" target=\"_blank\" rel=\"noopener noreferrer\">Webmail<\/a><\/p>\n<h4>Links to outside of BU:<\/h4>\n<p><span><a href=\"https:\/\/lungmap.net\/\" target=\"_blank\" rel=\"noopener noreferrer\">LungMAP<\/a> is a source for molecular maps of the neonatal, pediatric and early adult human lung.<\/span><\/p>\n<p><a href=\"https:\/\/medicine.yale.edu\/lab\/kaminski\/research\/atlas\/\" target=\"_blank\" rel=\"noopener noreferrer\">Naftali Kaminski&#8217;s website<\/a> offers links to multiple user-friendly tools for exploring scSeq atlases of lung diseases.<\/p>\n<p>The <a href=\"http:\/\/humphreyslab.com\/SingleCell\/\" target=\"_blank\" rel=\"noopener noreferrer\">HumphreysLab<\/a> website provides a nice resource for comparing scSeq and snSeq from mouse lungs.<\/p>\n<p><a href=\"https:\/\/www.bumc.bu.edu\/kottonlab\/bioinformatics-portal-kotton-lab\/\" target=\"_blank\" rel=\"noopener noreferrer\">Darrell Kotton<\/a>&#8216;s group provides multiple useful lung-relevant datasets on-line, especially relating to iPSC-derived lung cells.<\/p>\n<p>The <a href=\"https:\/\/www.ebi.ac.uk\/gxa\/sc\/home\" target=\"_blank\" rel=\"noopener noreferrer\">Single Cell Expression Atlas<\/a> from EMBL-EBI make lots of\u00a0 scRNA-seq datasets available.<\/p>\n<p><a href=\"https:\/\/www.immgen.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">Immgen<\/a> has many searchable ways to examine immune cell transcriptomes.<\/p>\n<p>The NIH makes data and biosamples from human studies available through <a href=\"https:\/\/gen3.biodatacatalyst.nhlbi.nih.gov\/login\" target=\"_blank\" rel=\"noopener noreferrer\">BioData Catalyst<\/a> and <a href=\"https:\/\/biolincc.nhlbi.nih.gov\/home\/\" target=\"_blank\" rel=\"noopener noreferrer\">BioLINCC<\/a>.<\/p>\n<p>Many <a href=\"https:\/\/www.thoracic.org\/professionals\/career-development\/grant-resource-guide.php\" target=\"_blank\" rel=\"noopener noreferrer\">grant opportunities<\/a> are listed on the ATS website.<\/p>\n<p><a href=\"http:\/\/www.atcc.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">ATCC<\/a> makes many cell lines and microbes available.<\/p>\n<p><a href=\"https:\/\/www.beiresources.org\/Home.aspx\" target=\"_blank\" rel=\"noopener noreferrer\">BEI<\/a> makes many infectious disease resources available.<\/p>\n<p><a href=\"https:\/\/www.mmrrc.org\/catalog\/sds.php?mmrrc_id=41492\" target=\"_blank\" rel=\"noopener noreferrer\">MMRRC<\/a> provides access to Zcchc11-deficient mice (as well as other strains).<\/p>\n<p><a href=\"http:\/\/www.jax.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">Jackson Labs<\/a>\u00a0makes many genetically engineered strains of mice available.<\/p>\n<p>The <a href=\"http:\/\/www.genetrap.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">International Gene Trap Consortium<\/a> site provides a searchable database of ES cell lines with genes trapped by insertional mutagenesis.<\/p>\n<p><a href=\"https:\/\/reporter.nih.gov\/\" target=\"_blank\" rel=\"noopener noreferrer\">NIH Reporter<\/a> provides information about current funded NIH grants.<\/p>\n<p><a href=\"https:\/\/public.era.nih.gov\/commonsplus\/public\/login.era?TARGET=https%3A%2F%2Fpublic.era.nih.gov%3A443%2Fcommons%2FcommonsInit.do\" target=\"_blank\" rel=\"noopener noreferrer\">eRA Commons<\/a> provides investigators access to their NIH applications and grants.<\/p>\n<p><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/\" target=\"_blank\" rel=\"noopener noreferrer\">NCBI<\/a> provides multiple interactive databases, particularly useful for sequence analyses.<\/p>\n<p>A <a href=\"https:\/\/www.nigms.nih.gov\/training\/pages\/clearinghouse-for-training-modules-to-enhance-data-reproducibility.aspx\" target=\"_blank\" rel=\"noopener noreferrer\">Clearinghouse for Training Modules to Enhance Data Reproducibility<\/a> is provided by the NIGMS.<\/p>\n<p><a href=\"https:\/\/arriveguidelines.org\/arrive-guidelines\" target=\"_blank\" rel=\"noopener noreferrer\">ARRIVE Guidelines<\/a> provide standards for <em>in vivo<\/em> animal research.<\/p>\n<p><a href=\"https:\/\/david.ncifcrf.gov\/\" target=\"_blank\" rel=\"noopener noreferrer\">DAVID Bioinformatics<\/a> provides useful resources for analyzing large lists of genes.<\/p>\n<p><a href=\"https:\/\/maayanlab.cloud\/Enrichr\/\" target=\"_blank\" rel=\"noopener noreferrer\">Enrichr<\/a> provides an easy on-line gene list enrichment analysis tool.<\/p>\n<p><a href=\"https:\/\/software.broadinstitute.org\/morpheus\/\" target=\"_blank\" rel=\"noopener noreferrer\">Morpheus<\/a> is a useful tool for heatmapping.<\/p>\n<p><img loading=\"lazy\" src=\"https:\/\/www.bumc.bu.edu\/pneumonia\/files\/Images\/tn_hippocbust.jpg\" alt=\"\" width=\"421\" height=\"316\" align=\"middle\" \/><\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Links to BU facilities and services: Animal Science Center AOps BioRAFT BU Blackboard BU e-journals BU Works BUMC Cores Cellular Imaging Core Data Science Core Experimental Pathology Laboratory Service Core Flow Cytometry Healthway IACUC iLabs iLabs &#8211; Add Funds link (for PIs) IRB Microarray and Sequencing Core MyBUWorks Onboarding Pulmonary Center Research In Progress seminars [&hellip;]<\/p>\n","protected":false},"author":1126,"featured_media":0,"parent":11,"menu_order":6,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/pages\/16"}],"collection":[{"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/users\/1126"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/comments?post=16"}],"version-history":[{"count":50,"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/pages\/16\/revisions"}],"predecessor-version":[{"id":1158,"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/pages\/16\/revisions\/1158"}],"up":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/pages\/11"}],"wp:attachment":[{"href":"https:\/\/www.bumc.bu.edu\/pneumonia\/wp-json\/wp\/v2\/media?parent=16"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}