{"id":2935,"date":"2017-06-04T19:55:43","date_gmt":"2017-06-04T23:55:43","guid":{"rendered":"https:\/\/www.bumc.bu.edu\/msr\/?page_id=2935"},"modified":"2022-05-12T11:57:14","modified_gmt":"2022-05-12T15:57:14","slug":"glycoproteomics-test-data","status":"publish","type":"page","link":"https:\/\/www.bumc.bu.edu\/msr\/glycoproteomics-test-data\/","title":{"rendered":"Publicly-available data sets"},"content":{"rendered":"

CBMS data posted to the Pride Archive:<\/em><\/p>\n

    \n
  1. Khatri, K.; Klein, J. A.; White, M. R.; Grant, O. C.; Leymarie, N.; Woods, R. J.; Hartshorn, K. L.; Zaia, J. Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions. Mol Cell Proteomics<\/em> 2016<\/strong>, 15<\/em>, 1895-912. Pubmed Link<\/font><\/a>
    \n    Pride Link<\/a>\n<\/li>\n
  2. Klein, J. A.; Meng, L.; Zaia, J. Deep sequencing of complex proteoglycans: a novel strategy for high coverage and site-specific identification of glycosaminoglycan-linked peptides. Mol Cell Proteomics<\/em> 2018<\/strong>, 10.1074\/mcp.RA118.000766.<\/em> Pubmed Link<\/font><\/a>
    \n    Pride Link<\/a>\n<\/li>\n
  3. Hogan, J. D.; Klein, J. A.; Wu, J.; Chopra, P.; Boons, G. J.; Carvalho, L.; Lin, C.; Zaia, J. Software for peak finding and elemental composition assignment for glycosaminoglycan tandem mass spectra. Mol Cell Proteomics<\/em> 2018<\/strong>, 17<\/em>, 1448-1456. Pubmed Link<\/font><\/a>
    \n    Pride Link<\/a>\n<\/li>\n
  4. Raghunathan, R.; Polinski, N. K.; Klein, J. A.; Hogan, J. D.; Shao, C.; Khatri, K.; Leon, D.; McComb, M. E.; Manfredsson, F. P.; Sortwell, C. E.; Zaia, J. Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway. Molecular & Cellular Proteomics<\/em> 2018<\/strong>, 17<\/em>, 1778-1787. Pubmed Link<\/font><\/a>
    \n    Pride Link<\/a>\n<\/li>\n
  5. Klein, J.; Zaia, J. Relative Retention Time Estimation Improves N-Glycopeptide Identifications By LC-MS\/MS. J Proteome Res<\/em> 2020<\/strong>, doi: 10.1021\/acs.jproteome.0c00051. Pubmed Link<\/font><\/A>
    \n    Pride Link<\/a>\n<\/li>\n
  6. Sethi, M. K.; Downs, M.; Zaia, J. Serial in-solution digestion protocol for mass spectrometry-based glycomics and proteomics analysis. Mol Omics<\/em> 2020<\/strong>, doi: 10.1039\/d0mo00019a. Pubmed Link<\/font><\/A>
    \n    Pride Link<\/a>\n<\/li>\n
  7. Chang, D.; Hackett, W. E.; Zhong, L.; Wan, X. F.; Zaia, J. Measuring Site-specific Glycosylation Similarity between Influenza a Virus Variants with Statistical Certainty. Mol Cell Proteomics<\/em> 2020<\/strong>, 19<\/em>, 1533-1545. Pubmed Link<\/font><\/A>
    \n    Pride link<\/a><\/li>\n
  8. Chang, D.; Klein, J. A.; Nalehua, M. R.; Hackett, W. E.; Zaia, J. Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein. Anal. Bioanal. Chem.<\/em> 2021<\/strong>, 413<\/em>, 7305\u20137318. Pubmed Link<\/font><\/A>\n<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

    CBMS data posted to the Pride Archive: Khatri, K.; Klein, J. A.; White, M. R.; Grant, O. C.; Leymarie, N.; Woods, R. J.; Hartshorn, K. L.; Zaia, J. Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions. Mol Cell Proteomics 2016, 15, 1895-912. Pubmed Link Pride Link […]<\/p>\n","protected":false},"author":1067,"featured_media":0,"parent":0,"menu_order":26,"comment_status":"closed","ping_status":"closed","template":"page-templates\/no-sidebars.php","meta":[],"_links":{"self":[{"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/pages\/2935"}],"collection":[{"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/users\/1067"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/comments?post=2935"}],"version-history":[{"count":37,"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/pages\/2935\/revisions"}],"predecessor-version":[{"id":3871,"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/pages\/2935\/revisions\/3871"}],"wp:attachment":[{"href":"https:\/\/www.bumc.bu.edu\/msr\/wp-json\/wp\/v2\/media?parent=2935"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}