{"id":3340,"date":"2018-04-03T15:47:03","date_gmt":"2018-04-03T19:47:03","guid":{"rendered":"https:\/\/www.bumc.bu.edu\/gsi\/?p=3340"},"modified":"2018-04-03T15:47:33","modified_gmt":"2018-04-03T19:47:33","slug":"ingenuity-pathway-analysis-ipa-training-and-clc-bio-seminar","status":"publish","type":"post","link":"https:\/\/www.bumc.bu.edu\/gsi\/2018\/04\/03\/ingenuity-pathway-analysis-ipa-training-and-clc-bio-seminar\/","title":{"rendered":"Ingenuity Pathway Analysis (IPA) Training and CLC bio Seminar"},"content":{"rendered":"<p style=\"text-align: center;\"><strong>QIAGEN Bioinformatics at Boston University Medical Campus<\/strong><br \/>\n<strong>Wednesday, April 11th<\/strong><br \/>\n<strong>Ingenuity Pathway Analysis (IPA) and CLC bio Seminar<\/strong><\/p>\n<p><u><b>Session 1:\u00a0 11:00 TO 12:00<\/b><\/u><\/p>\n<p>CLC product for secondary analysis<\/p>\n<p>Overview of Application, Importing NGS read data, QC &amp; Pre-processing<\/p>\n<ul>\n<li>De novo assembly \u2013 Genomes &amp; Transcriptomes. Characterizing Contigs, Joining &amp; Finishing<\/li>\n<li>Mapping\/Alignment to Reference, Variant Calling, Annotation &amp; Filtering<\/li>\n<li>RNA Seq Analysis Workflow &amp; Tools<\/li>\n<li>Overview of Microbial Modules (Finishing &amp; Microbial Genomics)<\/li>\n<\/ul>\n<p>CLC Biomedical Workbench &amp; Ingenuity Variant Analysis<\/p>\n<ul>\n<li>Prebuilt intuitive pipeline for your human DNA-seq data that allows you to quickly go from reads or called variants to identifying and prioritizing the casual variants.<\/li>\n<\/ul>\n<p><b>\u00a012:00 To 12:30- Pizza Lunch<\/b><\/p>\n<p><u><b>Session 2:\u00a0 12;30 TO 2:00<\/b><\/u><\/p>\n<p>IPA for insightful data analysis and interpretation<\/p>\n<ul>\n<li>Biological interpretation of gene (including RNAseq), protein and metabolic expression data<\/li>\n<li>Pathway involvement and change<\/li>\n<li>Effected biological processes<\/li>\n<li>Causal regulators and their directional effect on genes, functions and diseases across multiple time points or doses.<\/li>\n<li>Explore IPA&#8217;s knowledge and discovery tools that allow you to relate the most recent literature findings to your research.<\/li>\n<li>Questions and Answers<\/li>\n<\/ul>\n<p><b>Session 3- 2:00 TO 4:00<\/b><\/p>\n<p>Available for individual sessions by appointment, email Amar below<\/p>\n<p><b>Please register ahead of time so we have an accurate <\/b><\/p>\n<p><b>count for lunch<\/b><\/p>\n<p>Location: BUMC Instructional Building L214<br \/>\nPresenter:QianDong,Phd<br \/>\nApplicationScientist<br \/>\nRegister: Amar Swami<br \/>\nAmar.Swami@qiagen.com<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>QIAGEN Bioinformatics at Boston University Medical Campus Wednesday, April 11th Ingenuity Pathway Analysis (IPA) and CLC bio Seminar Session 1:\u00a0 11:00 TO 12:00 CLC product for secondary analysis Overview of Application, Importing NGS read data, QC &amp; Pre-processing De novo assembly \u2013 Genomes &amp; Transcriptomes. Characterizing Contigs, Joining &amp; Finishing Mapping\/Alignment to Reference, Variant Calling, [&hellip;]<\/p>\n","protected":false},"author":12961,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[712],"tags":[],"_links":{"self":[{"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/posts\/3340"}],"collection":[{"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/users\/12961"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/comments?post=3340"}],"version-history":[{"count":1,"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/posts\/3340\/revisions"}],"predecessor-version":[{"id":3341,"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/posts\/3340\/revisions\/3341"}],"wp:attachment":[{"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/media?parent=3340"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/categories?post=3340"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/gsi\/wp-json\/wp\/v2\/tags?post=3340"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}