{"id":93520,"date":"2021-06-08T11:08:44","date_gmt":"2021-06-08T15:08:44","guid":{"rendered":"http:\/\/www.bumc.bu.edu\/busm\/?page_id=93520"},"modified":"2026-05-20T10:05:05","modified_gmt":"2026-05-20T14:05:05","slug":"transmission-electron-microscope-tem","status":"publish","type":"page","link":"https:\/\/www.bumc.bu.edu\/camed\/research-impact\/cores\/transmission-electron-microscope-tem\/","title":{"rendered":"Transmission Electron Microscope (TEM)"},"content":{"rendered":"<p>As part of the Integrated Biomedical Imaging Services (IBIS), the Transmission Electron Microscope (TEM) system at the Boston University Medical Campus provides services for transmission electron microscopy imaging, as well as services for sample preparation and assistance with projects, experiment planning and analysis.<\/p>\n<h3 style=\"text-align: left;\"><a href=\"#ibisschedule\">How to Schedule<\/a> \u2502<a href=\"https:\/\/bostonu.ilab.agilent.com\/account\/login\">iLab Scheduler<\/a>\u2502<a href=\"#ibiscontact\">Contact<\/a><\/h3>\n<h2><strong>Instruments, Services and Rates<\/strong><\/h2>\n<h3><strong>JEOL JEM-1400Flash TEM<\/strong><\/h3>\n<p>&nbsp;<\/p>\n<p><a href=\"https:\/\/bostonu.ilab.agilent.com\/account\/login\"><img loading=\"lazy\" title=\"Book it Now!\" class=\"wp-image-94876 size-medium aligncenter\" src=\"\/camed\/files\/2021\/06\/JEM-1400-Flash-636x477.jpg\" alt=\"\" width=\"636\" height=\"477\" srcset=\"https:\/\/www.bumc.bu.edu\/camed\/files\/2021\/06\/JEM-1400-Flash-636x477.jpg 636w, https:\/\/www.bumc.bu.edu\/camed\/files\/2021\/06\/JEM-1400-Flash-1024x768.jpg 1024w, https:\/\/www.bumc.bu.edu\/camed\/files\/2021\/06\/JEM-1400-Flash-768x576.jpg 768w, https:\/\/www.bumc.bu.edu\/camed\/files\/2021\/06\/JEM-1400-Flash.jpg 1280w\" sizes=\"(max-width: 636px) 100vw, 636px\" \/><\/a><\/p>\n<h4><strong>Specifications of JEOL JEM-1400Flash TEM\u00a0<\/strong><\/h4>\n<div class=\"tableScroll\"><div><\/p>\n<table style=\"height: 742px;\" width=\"634\" height=\"247\">\n<tbody>\n<tr>\n<td><strong>Electron Source<\/strong><\/td>\n<td>LaB6 filament<\/td>\n<\/tr>\n<tr style=\"background-color: #f6f6f6;\">\n<td><strong>Accelerating Voltage<\/strong><\/td>\n<td>60 kv-120kv<\/td>\n<\/tr>\n<tr>\n<td><strong>Operation Modes<\/strong><\/td>\n<td>Bright Field<br \/>\nDark Field<br \/>\nDiffraction<\/td>\n<\/tr>\n<tr style=\"background-color: #f6f6f6;\">\n<td><strong>Magnification<\/strong><\/td>\n<td>Low Mag Mode 10X to 1,000X<br \/>\nStandard Mag Mode 200X to 1.2MX<\/td>\n<\/tr>\n<tr>\n<td><strong>TEM Resolution<\/strong><\/td>\n<td>0.2 nm lattice<\/p>\n<p>0.38 nm point to point<\/td>\n<\/tr>\n<tr style=\"background-color: #f6f6f6;\">\n<td><strong>Sample Holders<\/strong><\/td>\n<td>Jeol quick-change specimen holder with one specimen capacity<\/p>\n<p>Fischione 2040 dual axis rotating holder<\/td>\n<\/tr>\n<tr>\n<td><strong>Tilt Angles<\/strong><\/td>\n<td>\u00b125\u00b0 tilt with quick-change specimen holder<\/p>\n<p>\u00b170\u00b0 tilt with Fischione holder<\/td>\n<\/tr>\n<tr style=\"background-color: #f6f6f6;\">\n<td><strong>Image Recording<\/strong><\/td>\n<td>AMT NanoSprint-43M-B Mid-Mount CMOS camera with a large 7915\u00d75436 pixels format. This camera offers 5.5\u03bcm square pixels at the phosphor and images a 43 x 30 mm physical FOV.<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><\/div><\/div>\n<p>The JEOL JEM-1400 Flash TEM is equipped with:<\/p>\n<ol>\n<li><strong>Dual-Axis Fischione Model 2040 specimen holder<\/strong>, which allows for precise in situ specimen in-plane 360-degree rotation that is necessary for automated montaging and serial imaging. This specimen holder features an optimal tilt angle range in narrow gap (~ 5 mm) pole piece geometries, while maintaining microscope resolution. Thus, this holder can also be used for 3D tomography applications.<\/li>\n<li><strong>SerialEM and IMOD Software<\/strong>, which enables automated image acquisition, registration, and alignment of single- or dual axis tilt series. SerialEM also employs a versatile montaging system that can be used to acquire a large-scale image montage of the entire grid across the TEM sample. The IMOD software suite is a set of post-acquisition programs for processing the 3D tomography tilt series as well as serial section data into 3D reconstructions.<\/li>\n<\/ol>\n<h3><strong>Leica UCT Ultracut Ultramicrotome<\/strong><\/h3>\n<p><a href=\"https:\/\/bostonu.ilab.agilent.com\/account\/login\"><img loading=\"lazy\" src=\"\/camed\/files\/2021\/06\/microscope.jpg\" alt=\"\" class=\"alignleft wp-image-94891\" title=\"Book it Now!\" width=\"320\" height=\"290\" \/><\/a>This instrument is designed for extremely precise cutting of resin embedded biological specimens. It achieves consistent high quality ultra-thin sections (40-100 nm) for transmission electron microscopy, or semi-thin sections (1-2 \u00b5m) for light microscopy. It features a continuous feed range from 0 to 2.5 \u00b5m and has adjustable cutting speeds of 0.1 to 50 mm\/sec. The system consists of a control box with power cord, a microtome sectioning unit, and a microscope assembly with AO Stereostar 570 zoom body (0.7X \u2013 4.2X) with attached 10X eyepieces. It has a 6V, 10W halogen illumination system.<\/p>\n<p><strong>Services provided by TEM staff include<\/strong>:<\/p>\n<ul>\n<li>Training in transmission electron microscope operation;<\/li>\n<li>Assisted and unassisted use of the electron microscope;<\/li>\n<li>Tissue processing and resin embedding of specimens for TEM;<\/li>\n<li>Ultrathin sectioning of resin embedded specimens;<\/li>\n<li>Negative staining of small particles (e.g. purified viruses and proteins).<\/li>\n<\/ul>\n<div class=\"tableScroll\"><div>\n<table>\n<tbody>\n<tr style=\"background-color: #575759;\" valign=\"middle\" align=\"left\">\n<td><span style=\"color: #ffffff;\"><strong>Instruments | Services<br \/>\n<\/strong><\/span><\/td>\n<td><span style=\"color: #ffffff;\"><strong>BU Internal Rates<\/strong><\/span><\/td>\n<td><span style=\"color: #ffffff;\"><strong>External Academic Rates<\/strong><\/span><\/td>\n<td><span style=\"color: #ffffff;\"><strong><span>External Commercial Rates<\/span><\/strong><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #f6f6f6;\">\n<td><strong>JEM-1400 Flash 120kV TEM<\/strong><\/td>\n<td>$55\/hour unassisted<br \/>\n$123\/hour training\/assisted<\/td>\n<td>$90\/hour unassisted<br \/>\n$189\/hour training\/assisted<\/td>\n<td>$108\/hour unassisted<br \/>\n$240\/hour training\/assisted<\/td>\n<\/tr>\n<tr>\n<td><strong>TEM processing tissue embedding negative staining<\/strong><\/td>\n<td>$69\/hour<\/td>\n<td>$113\/hour<\/td>\n<td>$137\/hour<\/td>\n<\/tr>\n<tr style=\"background-color: #f6f6f6;\">\n<td><strong>Ultrathin sectioning of resin embedded tissue<\/strong><\/td>\n<td>$120\/hour<\/td>\n<td>$196\/hour<\/td>\n<td>$238\/hour<\/td>\n<\/tr>\n<tr>\n<td><strong>Leica UCT Ultracut Ultramicrotome<\/strong><\/td>\n<td>$22\/hour unassisted<br \/>\n$120\/hour training\/assisted<\/td>\n<td>$45\/hour unassisted<br \/>\n$196\/hour training\/assisted<\/td>\n<td>$55\/hour unassisted<br \/>\n$238\/hour training\/assisted<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><\/div><\/div><a name=\"ibisschedule\"><\/a><\/p>\n<h3><strong>How to Schedule<\/strong><\/h3>\n<p>Please login to <a href=\"https:\/\/bostonu.ilab.agilent.com\/account\/login\">iLab Scheduling System<\/a> to schedule equipment time or services. For new users please follow the steps outlined in<span>\u00a0<\/span><a href=\"https:\/\/www.bumc.bu.edu\/camed\/research\/cores\/accessing-cores\/information-for-new-users\/\">Information for New Users<\/a>.<\/p>\n<h3><strong>Hours<\/strong><\/h3>\n<p>Monday to Friday <strong> |<\/strong> 6 a.m. to 7 p.m.<br \/>\n<em>Additional hours are available for persons who have been approved by the Director and\/or Assistant Director<\/em>.<\/p>\n<h3><strong>Usage and Training<\/strong><\/h3>\n<p>Training is mandatory for all new users and requires:<\/p>\n<ol>\n<li>Review of an online instructional manuals and modules, via a training link provided by the core staff; and<\/li>\n<li>Scheduling of two consecutive 2-hour sessions of \u201cAssisted Use\u201d for practical in-person training.<\/li>\n<\/ol>\n<h3><strong>Types of Training<\/strong><u><\/u><\/h3>\n<ul>\n<li><strong>Basic User<\/strong> training includes basic TEM operation, use of JEOL specimen holder, AMT imaging, and serial EM\/IMOD basic training for 2D montaging.<\/li>\n<li><strong>Advanced User <\/strong>training is for users wanting to use more advanced features (tomography), which is available on a case-by-case basis. This training requires an additional set of online training modules, and \u201cAssisted Use\u201d in-person 2-hour training session.<\/li>\n<li><strong>Returning Users<\/strong> who have been initially trained but have not used the machine for more than 1 year will require a 1-hour in-person refresher training session.<\/li>\n<\/ul>\n<p>Please contact us to schedule training or assisted use. Once users have been trained, time on the instruments may be scheduled.<\/p>\n<p>We require that all users cancel sessions <strong>24 hours<\/strong> before the scheduled start time. <strong>Failure to cancel will result in the user (or PI) being billed for the entire scheduled duration<\/strong>.<\/p>\n<h3><strong>Acknowledgments<\/strong><\/h3>\n<p>The Transmission Electron Microscope was funded by the NIH Award Number S10OD028571. We greatly appreciate acknowledgement of NIH S10OD028571 in publications when authors use our equipment and\/or assistance in their research.<a name=\"ibiscontact\"><\/a><\/p>\n<h3><strong>Contact<\/strong><\/h3>\n<p><strong>Haiyan Gong, MD\/ PhD<\/strong><br \/>\nTEM Director<br \/>\n(617) 358-2213<strong> | <\/strong><a href=\"mailto:hgong@bu.edu\">hgong@bu.edu<\/a><\/p>\n<p><strong>Maria Medalla, PhD<\/strong><br \/>\nTEM Assistant Director<br \/>\n(617) 358-1893 (R Bldg. Office) <strong>| <\/strong> (617) 358-7717 (X Bldg. Office)<br \/>\n<a href=\"mailto:mmedalla@bu.edu\">mmedalla@bu.edu<\/a><\/p>\n<h3><strong>Location <\/strong><\/h3>\n<p>Boston University Chobanian &amp; Avedisian School of Medicine<br \/>\nHousman Medical Research Center<br \/>\n72 E. Concord Street, R Building, R-824A<br \/>\nBoston, MA 02118<\/p>\n<p><strong>View BU Medical Campus <\/strong><a href=\"https:\/\/www.bumc.bu.edu\/about\/map-directions\/\">MAPS<\/a><\/p>\n<p>\u25c4 <strong><a href=\"https:\/\/www.bumc.bu.edu\/camed\/our-impact\/cores\/ibis\/\"> Back to <\/a>Integrated Biomedical Imaging Services (IBIS) <a href=\"https:\/\/www.bumc.bu.edu\/camed\/our-impact\/cores\/ibis\/\">website<\/a><\/strong><\/p>\n<p style=\"text-align: right;\"><a href=\"#top\">BACK TO TOP\u2191<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>As part of the Integrated Biomedical Imaging Services (IBIS), the Transmission Electron Microscope (TEM) system at the Boston University Medical Campus provides services for transmission electron microscopy imaging, as well as services for sample preparation and assistance with projects, experiment planning and analysis. How to Schedule \u2502iLab Scheduler\u2502Contact Instruments, Services and Rates JEOL JEM-1400Flash TEM [&hellip;]<\/p>\n","protected":false},"author":10364,"featured_media":0,"parent":1215,"menu_order":35,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"bu-publication":[],"_links":{"self":[{"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/pages\/93520"}],"collection":[{"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/users\/10364"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/comments?post=93520"}],"version-history":[{"count":51,"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/pages\/93520\/revisions"}],"predecessor-version":[{"id":144430,"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/pages\/93520\/revisions\/144430"}],"up":[{"embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/pages\/1215"}],"wp:attachment":[{"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/media?parent=93520"}],"wp:term":[{"taxonomy":"bu-publication","embeddable":true,"href":"https:\/\/www.bumc.bu.edu\/camed\/wp-json\/wp\/v2\/bu-publication?post=93520"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}