Martin A. Steffen, MD, PhD

Assistant Professor, Pathology & Laboratory Medicine

Martin Steffen
(617) 414-7935
670 Albany St Biosquare III

Biography

Expertise includes: Proteomics; Systems Biology; Mammalian Disease; Gene Function Determination; Computational Biology.

Other Positions

  • Graduate Faculty (Primary Mentor of Grad Students), Boston University School of Medicine, Division of Graduate Medical Sciences

Education

  • Stanford University, MD
  • Stanford University, PhD
  • Dartmouth College, BS

Publications

  • Published on 1/1/2017

    Škunca N, Roberts RJ, Steffen M. Evaluating Computational Gene Ontology Annotations. Methods Mol Biol. 2017; 1446:97-109. PMID: 27812938.

    Read at: PubMed
  • Published on 6/14/2016

    Herrera VL, Steffen M, Moran AM, Tan GA, Pasion KA, Rivera K, Pappin DJ, Ruiz-Opazo N. Confirmation of translatability and functionality certifies the dual endothelin1/VEGFsp receptor (DEspR) protein. BMC Mol Biol. 2016 Jun 14; 17(1):15. PMID: 27301377.

    Read at: PubMed
  • Published on 5/6/2016

    Vanderweyde T, Apicco DJ, Youmans-Kidder K, Ash PEA, Cook C, Lummertz da Rocha E, Jansen-West K, Frame AA, Citro A, Leszyk JD, Ivanov P, Abisambra JF, Steffen M, Li H, Petrucelli L, Wolozin B. Interaction of tau with the RNA-Binding Protein TIA1 Regulates tau Pathophysiology and Toxicity. Cell Rep. 2016 May 17; 15(7):1455-1466. PMID: 27160897.

    Read at: PubMed
  • Published on 12/3/2015

    Chang YC, Hu Z, Rachlin J, Anton BP, Kasif S, Roberts RJ, Steffen M. COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucleic Acids Res. 2016 Jan 4; 44(D1):D330-5. PMID: 26635392.

    Read at: PubMed
  • Published on 7/8/2014

    Anton BP, Kasif S, Roberts RJ, Steffen M. Objective: biochemical function. Front Genet. 2014; 5:210. PMID: 25071837.

    Read at: PubMed
  • Published on 8/27/2013

    Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013; 11(8):e1001638. PMID: 24013487.

    Read at: PubMed
  • Published on 6/18/2013

    Choi HP, Juarez S, Ciordia S, Fernandez M, Bargiela R, Albar JP, Mazumdar V, Anton BP, Kasif S, Ferrer M, Steffen M. Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori. PLoS One. 2013; 8(6):e66605. PMID: 23825549.

    Read at: PubMed
  • Published on 11/28/2012

    Flanigon J, Kamali-Moghaddam M, Burbulis I, Annink C, Steffen M, Oeth P, Brent R, van den Boom D, Landegren U, Cantor C. Multiplex protein detection with DNA readout via mass spectrometry. N Biotechnol. 2013 Jan 25; 30(2):153-8. PMID: 23201185.

    Read at: PubMed
  • Published on 10/30/2012

    Wood DE, Lin H, Levy-Moonshine A, Swaminathan R, Chang YC, Anton BP, Osmani L, Steffen M, Kasif S, Salzberg SL. Thousands of missed genes found in bacterial genomes and their analysis with COMBREX. Biol Direct. 2012; 7:37. PMID: 23111013.

    Read at: PubMed
  • Published on 4/14/2011

    Bergerat A, Decano J, Wu CJ, Choi H, Nesvizhskii AI, Moran AM, Ruiz-Opazo N, Steffen M, Herrera VL. Prestroke proteomic changes in cerebral microvessels in stroke-prone, transgenic[hCETP]-Hyperlipidemic, Dahl salt-sensitive hypertensive rats. Mol Med. 2011; 17(7-8):588-98. PMID: 21519634.

    Read at: PubMed

View 16 more publications: View full profile at BUMC

View all profiles