Publications

Please contact me to request PDF files for these papers: Joe Zaia (jzaia at bu dot edu).

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Publications through Sept., 2012

  1. Tran, T. H.; Shi, X.; Zaia, J.; Ai, X. Sulfs coordinate the Wnt signaling pathways to regulate myoblast fusion during skeletal muscle regeneration. The Journal of biological chemistry 2012, in press. Pubmed Link

  2. Thelin, M.; Svensson, K. J.; Shi, X.; Bagher, M.; Axelsson, J.; Isinger-Ekstrand, A.; van Kuppevelt, T. H.; Johansson, J.; Nilbert, M.; Zaia, J.; Belting, M.; Maccarana, M.; Malmstrom, A. Dermatan sulfate is involved in the tumorigenic properties of Esophagus Squamous Cell Carcinoma. Cancer Res. 2012, 72, 1943-1952. Pubmed Link
  3. Shi, X.; Huang, Y.; Mao, Y.; Naimy, H.; Zaia, J. Tandem mass spectrometry of heparan sulfate negative ions: sulfate loss patterns and chemical modification methods for improvement of product ion profiles. J. Am. Soc. Mass Spectrom. 2012, 23, 1498-511. Pubmed Link
  4. Maxwell, E.; Tan, Y.; Tan, Y.; Hu, H.; Benson, G.; Aizikov, K.; Conley, S.; Staples, G. O.; Slysz, G. W.; Smith, R. D.; Zaia, J. GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data. PLoS ONE 2012, 7, e45474. Pubmed Link
  5. Lu, Z.; Madico, G.; Roche, M. I.; Wang, Q.; Hui, J. H.; Perkins, H. M.; Zaia, J.; Costello, C. E.; Sharon, J. Protective B-cell epitopes of Francisella tularensis O-polysaccharide in a mouse model of respiratory tularaemia. Immunology 2012, 136, 352-360. Pubmed Link
  6. Li, L.; Zhang, F.; Zaia, J.; Linhardt, R. J. Top-down approach for the direct characterization of low molecular weight heparins using LC-FT-MS. Anal. Chem. 2012, . Pubmed Link

  7. Leymarie, N.; Zaia, J. Effective use of mass spectrometry for glycan and glycopeptide structural analysis. Anal. Chem. 2012, 84, 3040-8. Pubmed Link
  8. Gill, V. L.; Wang, Q.; Shi, X.; Zaia, J. Mass Spectrometric Method for Determining the Uronic Acid Epimerization in Heparan Sulfate Disaccharides Generated Using Nitrous Acid. Anal. Chem. 2012, 84, 7539-7546. Pubmed Link
  9. Wang, Q.; Shi, X.; Leymarie, N.; Madico, G.; Sharon, J.; Costello, C. E.; Zaia, J. A Typical Preparation of Francisella tularensisO-Antigen Yields a Mixture of Three Types of Saccharides. Biochemistry 2011, 50, 10941-50. Pubmed Link
  10. Huang, Y.; Shi, X.; Yu, X.; Leymarie, N.; Staples, G. O.; Yin, H.; Killeen, K.; Zaia, J. Improved LC-MS/MS of Heparan Sulfate Oligosaccharides via Chip-based Pulsed Make-up Flow. Anal. Chem. 2011, 83, 8222-8229. Pubmed Link
  11. Crouch, E.; Nikolaidis, N.; McCormack, F.; McDonald, B.; Allen, K.; Rynkiewicz, M.; Cafarella, T.; White, M.; Lewnard, K.; Leymarie, N.; Zaia, J.; Seaton, B.; Hartshorn, K. Mutagenesis of SP-D informed by evolution and xray crystallography enhances defenses against Influenza A Virus in vivo. J Biol Chem 2011, 286, 40681-92. Pubmed Link
  12. Zaia, J. At last, functional glycomics. Nat Methods 2011, 8, 55-7. Pubmed Link
  13. Staples, G. O.; Zaia, J. In Carbohydrate Recognition; John Wiley & Sons, Inc., 2011, pp 257-300.
  14. Staples, G. O.; Shi, X.; Zaia, J. Glycomics analysis of mammalian heparan sulfates modified by the human extracellular sulfatase HSulf2. PLoS ONE 2011, 6, e16689. Pubmed Link

  15. Schumacher, V. A.; Schlotzer-Schrehardt, U.; Karumanchi, S. A.; Shi, X.; Zaia, J.; Jeruschke, S.; Zhang, D.; Pavenstaedt, H.; Drenckhan, A.; Amann, K.; Ng, C.; Hartwig, S.; Ng, K. H.; Ho, J.; Kreidberg, J. A.; Taglienti, M.; Royer-Pokora, B.; Ai, X. WT1-Dependent Sulfatase Expression Maintains the Normal Glomerular Filtration Barrier. J Am Soc Nephrol 2011, 22, 1286-96. Pubmed Link
  16. Naimy, H.; Buczek-Thomas, J. A.; Nugent, M. A.; Leymarie, N.; Zaia, J. Highly sulfated non reducing end-derived heparan sulfate domains bind fibroblast growth factor-2 with high affinity and are enriched in biologically active fractions. J Biol Chem 2011, 286, 19311-19319. Pubmed Link
  17. Leymarie, N.; McComb, M.; Naimy, H.; Staples, G.; Zaia, J. Differential Characterization and Classification of Tissue Specific Glycosaminoglycans by Tandem Mass Spectrometry and Statistical Methods. Int J Mass Spectrom 2011, Accepted 7/13/11. Pubmed Link

  18. Langsdorf, A.; Schumacher, V.; Shi, X.; Tran, T.; Zaia, J.; Jain, S.; Taglienti, M.; Kreidberg, J. A.; Fine, A.; Ai, X. Expression regulation and function of heparan sulfate 6-O-endosulfatases in the spermatogonial stem cell niche. Glycobiology 2011, 21, 152-61. Pubmed Link
  19. Dreyfuss, J. M.; Jacobs, C.; Gindin, Y.; Benson, G.; Staples, G. O.; Zaia, J. Targeted analysis of glycomics liquid chromatography/mass spectrometry data. Anal Bioanal Chem 2011, 399, 727-35. Pubmed Link
  20. Bielik, A. M.; Zaia, J. Multistage Tandem Mass Spectrometry of Chondroitin Sulfate and Dermatan Sulfate. Int J Mass Spectrom 2011, 305, 131-137. Pubmed Link
  21. Zaia, J. Mass spectrometry and glycomics. OMICS 2010, 14, 401-18. Pubmed Link
  22. Staples, G. O.; Shi, X.; Zaia, J. Extended NS domains reside at the non-reducing end of heparan sulfate chains. J Biol Chem 2010, 285, 18336-18343. Pubmed Link
  23. Staples, G. O.; Naimy, H.; Yin, H.; Kileen, K.; Kraiczek, K.; Costello, C. E.; Zaia, J. Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow. Anal. Chem. 2010, 82, 516-22. Pubmed Link
  24. Naimy, H.; Leymarie, N.; Zaia, J. Screening for anticoagulant heparan sulfate octasaccharides and fine structure characterization using tandem mass spectrometry. Biochemistry 2010, 49, 3743-3752. Pubmed Link
  25. Bowman, M. J.; Zaia, J. Comparative glycomics using a tetraplex stable-isotope coded tag. Anal. Chem. 2010, 82, 3023-31. Pubmed Link
  26. Bielik, A. M.; Zaia, J. Extraction of chondroitin/dermatan sulfate glycosaminoglycans from connective tissue for mass spectrometric analysis. Methods Mol Biol 2010, 600, 215-25. Pubmed Link
  27. Bielik, A. M.; Zaia, J. Historical overview of glycoanalysis. Methods Mol Biol 2010, 600, 9-30. Pubmed Link
  28. Zaia, J. On-line separations combined with MS for analysis of glycosaminoglycans. Mass Spectrom Rev 2009, 28, 254-272. Pubmed Link
  29. Staples, G.; Bowman, M.; Costello, C. E.; Hitchcock, A.; Lau, J.; Leymarie, N.; Miller, C.; Naimy, H.; Shi, X.; Zaia, J. A Chip-based Amide-HILIC LC/MS Platform for Glycosaminoglycan Glycomics. Proteomics 2009, 9, 686-695. Pubmed Link
  30. Shi, X.; Zaia, J. Organ-specific heparan sulfate structural phenotypes. J. Biol. Chem. 2009, 284, 11806-11814. Pubmed Link
  31. Zaia, J. Mass spectrometry and the emerging field of glycomics. Chem Biol 2008, 15, 881-92. Pubmed Link
  32. Naimy, H.; Leymarie, N.; Bowman, M.; Zaia, J. Characterization of heparin oligosaccharides binding specifically to antithrombin III using mass spectrometry. Biochemistry 2008, 47, 3155-3161. Pubmed Link
  33. Hitchcock, A.; Yates, K. E.; Costello, C.; Zaia, J. Comparative Glycomics of Connective Tissue Glycosaminoglycans Proteomics 2008, 8, 1384-97. Pubmed Link
  34. Hitchcock, A.; Bowman, M.; Staples, G.; Zaia, J. Improved Workup for Glycosaminoglycan Disaccharide Analysis using Capillary Electrophoresis with Laser-Induced Fluorescence Detection. Electrophoresis 2008, 29, 4538-4548. Pubmed Link
  35. Zaia, J.; Miller, M. J. C.; Seymour, J. L.; Costello, C. E. The Role of Mobile Protons in Negative Ion CID of Oligosaccharides. J. Am. Soc. Mass Spectrom. 2007, 18, 952-960. Pubmed Link
  36. Zaia, J. In Encyclopedia of Mass Spectrometry, vol. 6; Gross, M. G., Ed., 2007.
  37. Bowman, M.; Zaia, J. Novel tags for the stable isotopic labeling of carbohydrates and quantitative analysis by mass spectrometry. Anal. Chem. 2007, 76, 5777-5784. Pubmed Link
  38. Ziegler, A.; Zaia, J. Size-exclusion chromatography of heparin oligosaccharides at high and low pressure. J Chromatogr B Analyt Technol Biomed Life Sci 2006, 837, 76-86. Pubmed Link
  39. Zaia, J. In Ionization Methods; Gross, M. L., Caprioli, R. M., Eds.; Elsevier: Amsterdam, 2006; Vol. 6, pp 889-903.
  40. Seymour, J. L.; Costello, C. E.; Zaia, J. The influence of sialylation on glycan negative ion dissociation and energetics. J. Am. Soc. Mass Spectrom. 2006, 17, 844-854. Pubmed Link
  41. Miller, M. J. C.; Costello, C. E.; Malmström, A.; Zaia, J. A tandem mass spectrometric approach to determination of chondroitin/dermatan sulfate oligosaccharide glycoforms. Glycobiology 2006, 16, 502-513. Pubmed Link
  42. Hitchcock, A. M.; Yates, K. E.; Shortkroff, S.; Costello, C. E.; Zaia, J. Optimized extraction of glycosaminoglycans from normal and osteoarthritic cartilage for glycomics profiling. Glycobiology 2006, 17, 25-35. Pubmed Link
  43. Hitchcock, A. M.; Costello, C. E.; Zaia, J. Glycoform quantification of chondroitin/dermatan sulfate using an LC/MS/MS platform. Biochemistry 2006, 45, 2350-61. Pubmed Link
  44. Zaia, J. Principles of Mass Spectrometry of Glycosaminoglycans. Journal of Biomacromolecular Mass Spectrometry 2005, 1, 3-36. Pubmed Link
  45. Zaia, J. Mass spectrometry of oligosaccharides. Mass Spectrom Reviews 2004, 23, 161-227. Pubmed Link
  46. Naggar, E. F.; Costello, C. E.; Zaia, J. Competing fragmentation processes in tandem mass spectra of heparin-like glycosaminoglycans. J Am Soc Mass Spectrom 2004, 15, 1534-44. Pubmed Link
  47. Zaia, J.; Li, X.-Q.; Chan, S.-Y.; Costello, C. E. Tandem mass spectrometric strategies for determination of sulfation positions and uronic acid epimerization in chondroitin sulfate oligosaccharides. J Am Soc Mass Spectrom 2003, 14, 1270-1281. Pubmed Link
  48. Zaia, J.; Costello, C. E. Tandem mass spectrometry of sulfated heparin-like glycosaminoglycan oligosaccharides. Anal. Chem. 2003, 75, 2445-2455. Pubmed Link
  49. McClellan, J. M.; Costello, C. E.; O’Connor, P. B.; Zaia, J. Influence of charge state on product ion mass spectra and the determination of 4S/6S sulfation sequence of chondroitin sulfate oligosaccharides. Anal. Chem. 2002, 74, 3760-3771. Pubmed Link
  50. Zaia, J.; McClellan, J. E.; Costello, C. E. Tandem mass spectrometric determination of the 4S/6S sulfation sequence in chondroitin sulfate oligosaccharides. Anal. Chem. 2001, 73, 6030-6039. Pubmed Link
  51. Zaia, J.; Costello, C. E. Compositional analysis of glycosaminoglycans by electrospray mass spectrometry. Anal. Chem. 2001, 73, 233-239. Pubmed Link
  52. Zaia, J.; Boynton, R.; Heinegård, D.; Barry, F. Posttranslational modifications to human bone sialoprotein determined by mass spectrometry. Biochemistry 2001, 40, 12983-12991. Pubmed Link
  53. Barry, F.; Boynton, R.; Murphy, M.; Zaia, J. The SH-3 and SH-4 Antibodies Recognize Distinct Epitopes on CD73 from Human Mesenchymal Stem Cells. Biochem Biophys Res Commun 2001, 289, 519-24. Pubmed Link
  54. Zaia, J.; Liu, B.; Boynton, R.; Barry, F. Structural Analysis of Cartilage Proteoglycans and Glycoproteins Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry. Anal Biochem 2000, 277, 94-103. Pubmed Link
  55. Cheng, X.; Cole, R. N.; Zaia, J.; Hart, G. W. Alternative O-Glycosylation/O-Phosphorylation of the Murine Estrogen Receptor beta. Biochemistry 2000, 39, 11609-11620. Pubmed Link
  56. Fenselau, C.; Antoine, M. D.; Fabris, D.; Hathout, Y.; He, T.; Zaia, J. In Metallothionein IV; Klaasen, C., Ed.; Birkhauser: Basel, 1999, pp 577-580.
  57. Barry, F. P.; Boynton, R. E.; Haynesworth, S.; Murphy, J. M.; Zaia, J. The monoclonal antibody SH-2, raised against human mesenchymal stem cells, recognizes an epitope on endoglin (CD105). Biochem Biophys Res Commun 1999, 265, 134-9. Pubmed Link
  58. Zaia, J.; Fabris, D.; Wei, D.; Karpel, R. L.; Fenselau, C. Monitoring metal ion flux in reactions of metallothionein and drug- modified metallothionein by electrospray mass spectrometry. Protein Sci 1998, 7, 2398-404. Pubmed Link
  59. van den Bos, C.; Rammes, A.; Vogl, T.; Boynton, R.; Zaia, J.; Sorg, C.; Roth, J. Copurification of P6, MRP8, and MRP14 from human granulocytes and separation of individual proteins. Protein expression and purification 1998, 13, 313-8. Pubmed Link
  60. Bruder, S. P.; Ricalton, N. S.; Boynton, R. E.; Connolly, T. J.; Jaiswal, N.; Zaia, J.; Barry, F. P. Mesenchymal stem cell surface antigen SB-10 corresponds to activated leukocyte cell adhesion molecule and is involved in osteogenic differentiation. J Bone Miner Res 1998, 13, 655-63. Pubmed Link
  61. Zaia, J.; Boynton, R. E.; McIntosh, A.; Marshak, D. R.; Olsson, H.; Heinegård, D.; Barry, F. P. Post-translational modifications in cartilage oligomeric matrix protein. Characterization of the N-linked oligosaccharides by matrix- assisted laser desorption ionization time-of-flight mass spectrometry. J Biol Chem 1997, 272, 14120-14126. Pubmed Link
  62. Zaia, J.; Jiang, L.; Han, M. S.; Tabb, J. R.; Wu, Z.; Fabris, D.; Fenselau, C. A binding site for chlorambucil on metallothionein. Biochemistry 1996, 35, 2830-5. Pubmed Link
  63. Zaia, J. Charged derivatives for peptide sequencing using a magnetic sector instrument. Methods Mol Biol 1996, 61, 29-41. Pubmed Link
  64. Fabris, D.; Zaia, J.; Hathout, Y.; Fenselau, C. Retention of thiol protons in two classes of protein zinc ion coordination centers. J. Am. Chem. Soc. 1996, 118, 12242-12243.<A HREF=”://A1996VX05500039″ target = “blank”> Pubmed Link
  65. Zaia, J.; Biemann, K. Comparison of charged derivatives for high energy collision-induced dissociation tandem mass spectrometry. J. Am. Soc. Mass Spectrom. 1995, 6, 429-436. Pubmed Link
  66. Zaia, J.; Biemann, K. Proteinase K activity inhibited near amino acids carrying large substituents: three PAH diolepoxides covalently modify His-146 human serum albumin residues. J. Am. Chem. Soc. 1994, 116, 7407-7408. Pubmed Link
  67. Zaia, J.; Biemann, K. Characteristics of high energy collision-induced dissociation tandem mass spectra of polycyclic aromatic hydrocarbon diolepoxide adducted peptides. J. Am. Soc. Mass Spectrom. 1994, 5, 649-654. Pubmed Link
  68. Day, B. W.; Skipper, P. L.; Zaia, J.; Singh, K.; Tannenbaum, S. R. Enantiospecificity of covalent adduct formation by benzo[a]pyrene anti- diol epoxide with human serum albumin. Chem Res Toxicol 1994, 7, 829-35. Pubmed Link
  69. Zaia, J.; Annan, R. S.; Biemann, K. The correct molecular weight of myoglobin, a common calibrant for mass spectrometry. Rapid Commun Mass Spectrom 1992, 6, 32-6. Pubmed Link
  70. Day, B. W.; Skipper, P. L.; Zaia, J.; Tannenbaum, S. R. Benzo[a]pyrene anti-diol epoxide covalently modifies human serum albumin carboxylate side chains and imidazole side chains of histidine(146). J. Am. Chem. Soc. 1991, 113, 8505-8509. Pubmed Link
  71. Wenzel, T. J.; Zaia, J. Organic-Soluble Lanthanide Nuclear-Magnetic-Resonance Shift-Reagents for Sulfonium and Isothiouronium Salts. Anal. Chem. 1987, 59, 562-567.<A HREF=”://A1987F957100007″ target = “blank”> Pubmed Link
  72. Nicholson-weller, A.; Zaia, J.; Raum, M. G.; Coligan, J. E. Decay Accelerating Factor (Daf) Peptide Sequences Share Homology with a Consensus Sequence Found in the Superfamily of Structurally Related Complement Proteins and Other Proteins Including Haptoglobin, Factor-Xiii, Beta-2-Glycoprotein-I, and the Il-2 Receptor. Immunol. Lett. 1987, 14, 307-311.<A HREF=”://A1987H022000010″ target = “blank”> Pubmed Link
  73. Wenzel, T. J.; Zaia, J. Lanthanide Tetrakis (Beta-Diketonates) as Effective NMR Shift-Reagents for Organic Salts. J Org Chem 1985, 50, 1322-1324.<A HREF=”://A1985AFT1000041″ target = “blank”> Pubmed Link

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of BU School of Medicine