Costello Publications 2007-11

Seward, R. J.; Drouin, E. E.; Steere, A. C.; Costello, C. E. Peptides Presented by HLA-DR Molecules in Synovia of Patients with Rheumatoid Arthritis or Antibiotic-Refractory Lyme Arthritis. Mol Cell Proteomics 2011, 10, M110 002477. Pubmed Link
Zee, R. S.; Yoo, C. B.; Pimentel, D. R.; Perlman, D. H.; Burgoyne, J. R.; Hou, X.; McComb, M. E.; Costello, C. E.; Cohen, R. A.; Bachschmid, M. M. Redox regulation of sirtuin-1 by S-glutathiolation. Antioxidants & redox signaling 2010, 13, 1023-32. Pubmed Link
Wada, Y.; Dell, A.; Haslam, S. M.; Tissot, B.; Canis, K.; Azadi, P.; Backstrom, M.; Costello, C. E.; Hansson, G. C.; Hiki, Y.; Ishihara, M.; Ito, H.; Kakehi, K.; Karlsson, N.; Kato, K.; Kawasaki, N.; Khoo, K. H.; Kobayashi, K.; Kolarich, D.; Kondo, A.; Lebrilla, C.; Nakano, M.; Narimatsu, H.; Novak, J.; Novotny, M. V.; Ohno, E.; Packer, N. H.; Renfrow, M. B.; Tajiri, M.; Thomsson, K. A.; Yagi, H.; Yu, S. Y.; Taniguchi, N. Comparison of Methods for Profiling O-glycosylation: HUPO Human Disease Glycomics/Proteome Initiative Multi-Institutional Study of IgA1. Mol Cell Proteomics 2010, 9, 719-727. Pubmed Link
Staples, G. O.; Naimy, H.; Yin, H.; Kileen, K.; Kraiczek, K.; Costello, C. E.; Zaia, J. Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow. Anal. Chem. 2010, 82, 516-22. Pubmed Link
Palaima, E.; Leymarie, N.; Stroud, D.; Mizanur, R. M.; Hodgkin, J.; Gravato-Nobre, M. J.; Costello, C. E.; Cipollo, J. F. The Caenorhabditis elegans bus-2 mutant reveals a new class of O-glycans affecting bacterial resistance. J Biol Chem 2010, 285, 17662-72. Pubmed Link
Li, X.; Lin, C.; Han, L.; Costello, C. E.; O’Connor, P. B. Charge remote fragmentation in electron capture and electron transfer dissociation. J Am Soc Mass Spectrom 2010, 21, 646-56. Pubmed Link
Ebbel, E. N.; Leymarie, N.; Schiavo, S.; Sharma, S.; Gevorkian, S.; Hersch, S.; Matson, W. R.; Costello, C. E. Identification of phenylbutyrate-generated metabolites in Huntington disease patients using parallel liquid chromatography/electrochemical array/mass spectrometry and off-line tandem mass spectrometry. Anal Biochem 2010, 399, 152-61. Pubmed Link
Chatterjee, A.; Carpentieri, A.; Ratner, D. M.; Bullitt, E.; Costello, C. E.; Robbins, P. W.; Samuelson, J. Giardia cyst wall protein 1 is a lectin that binds to curled fibrils of the GalNAc homopolymer. PLoS Pathog 2010, 6, e1001059. Pubmed Link
Carpentieri, A.; Ratner, D. M.; Ghosh, S. K.; Banerjee, S.; Bushkin, G. G.; Cui, J.; Lubrano, M.; Steffen, M.; Costello, C. E.; O’Keefe, B.; Robbins, P. W.; Samuelson, J. The anti-retroviral lectin cyanovirin-N targets well-known and novel targets on the surface of Entamoeba histolytica trophozoites. Eukaryot Cell 2010, 9, 1661-1668. Pubmed Link
Young, D. C.; Kasmar, A.; Moraski, G.; Cheng, T. Y.; Waltz, A. J.; Hu, J.; Xu, X.; Endres, G. W.; Uzieblo, A.; Zajonc, D.; Costello, C. E.; Miller, M. J.; Moody, D. B. Synthesis of dideoxymycobactin antigens presented by CD1A reveals T cell fine specificity for natural lipopeptide structures. J Biol Chem 2009, 284, 25087-25096. Pubmed Link
Ying, W.; Perlman, D. H.; Li, L.; Theberge, R.; Costello, C. E.; McComb, M. E. Highly efficient and selective enrichment of peptide subsets combining fluorous chemistry with reversed-phase chromatography. Rapid Commun Mass Spectrom 2009, 23, 4019-30. Pubmed Link
Wang, Y.; Meriin, A. B.; Zaarur, N.; Romanova, N. V.; Chernoff, Y. O.; Costello, C. E.; Sherman, M. Y. Abnormal proteins can form aggresome in yeast: aggresome-targeting signals and components of the machinery. FASEB J 2009, 23, 451-63. Pubmed Link
Staples, G.; Bowman, M.; Costello, C. E.; Hitchcock, A.; Lau, J.; Leymarie, N.; Miller, C.; Naimy, H.; Shi, X.; Zaia, J. A Chip-based Amide-HILIC LC/MS Platform for Glycosaminoglycan Glycomics. Proteomics 2009, 9, 686-695. Pubmed Link
Singh, B. N.; Hayes, G. R.; Lucas, J. J.; Sommer, U.; Viseux, N.; Mirgorodskaya, E.; Trifonova, R. T.; Sassi, R. R.; Costello, C. E.; Fichorova, R. N. Structural details and composition of Trichomonas vaginalis lipophosphoglycan in relevance to the epithelial immune function. Glycoconj J 2009, 26, 3-17. Pubmed Link
Romesser, P. B.; Perlman, D. H.; Faller, D. V.; Costello, C. E.; McComb, M. E.; Denis, G. V. Development of a malignancy-associated proteomic signature for diffuse large B-cell lymphoma. The American journal of pathology 2009, 175, 25-35. Pubmed Link
Rex, S.; Beaulieu, L. M.; Perlman, D. H.; Vitseva, O.; Blair, P. S.; McComb, M. E.; Costello, C. E.; Freedman, J. E. Immune versus thrombotic stimulation of platelets differentially regulates signalling pathways, intracellular protein-protein interactions, and alpha-granule release. Thromb Haemost 2009, 102, 97-110. Pubmed Link
Perlman, D. H.; Bauer, S. M.; Ashrafian, H.; Bryan, N. S.; Garcia-Saura, M. F.; Lim, C. C.; Fernandez, B. O.; Infusini, G.; McComb, M. E.; Costello, C. E.; Feelisch, M. Mechanistic insights into nitrite-induced cardioprotection using an integrated metabolomic/proteomic approach. Circ Res 2009, 104, 796-804. Pubmed Link
Makkinje, A.; Near, R. I.; Infusini, G.; Vanden Borre, P.; Bloom, A.; Cai, D.; Costello, C. E.; Lerner, A. AND-34/BCAR3 regulates adhesion-dependent p130Cas serine phosphorylation and breast cancer cell growth pattern. Cell Signal 2009, 21, 1423-35. Pubmed Link
Kilcoyne, M.; Shah, M.; Gerlach, J. Q.; Bhavanandan, V.; Nagaraj, V.; Smith, A. D.; Fujiyama, K.; Sommer, U.; Costello, C. E.; Olszewski, N.; Joshi, L. O-glycosylation of protein subpopulations in alcohol-extracted rice proteins. J Plant Physiol 2009, 166, 219-32. Pubmed Link
Jones, K. L.; Seward, R. J.; Ben-Menachem, G.; Glickstein, L. J.; Costello, C. E.; Steere, A. C. Strong IgG antibody responses to Borrelia burgdorferi glycolipids in patients with Lyme arthritis, a late manifestation of the infection. Clin Immunol 2009, 132, 93-102. Pubmed Link
Connors, L. H.; Prokaeva, T.; Lim, A.; Theberge, R.; Falk, R. H.; Doros, G.; Berg, A.; Costello, C. E.; O’Hara, C.; Seldin, D. C.; Skinner, M. Cardiac amyloidosis in African Americans: comparison of clinical and laboratory features of transthyretin V122I amyloidosis and immunoglobulin light chain amyloidosis. Am Heart J 2009, 158, 607-14. Pubmed Link
Bhatia, V. N.; Perlman, D. H.; Costello, C. E.; McComb, M. E. Software tool for researching annotations of proteins: open-source protein annotation software with data visualization. Anal. Chem. 2009, 81, 9819-23. Pubmed Link
Zhao, C.; Xie, B.; Chan, S. Y.; Costello, C. E.; O’Connor, P. B. Collisionally activated dissociation and electron capture dissociation provide complementary structural information for branched permethylated oligosaccharides. J Am Soc Mass Spectrom 2008, 19, 138-50. Pubmed Link
Mathivanan, S.; Ahmed, M.; Ahn, N. G.; Alexandre, H.; Amanchy, R.; Andrews, P. C.; Bader, J. S.; Balgley, B. M.; Bantscheff, M.; Bennett, K. L.; Bjorling, E.; Blagoev, B.; Bose, R.; Brahmachari, S. K.; Burlingame, A. S.; Bustelo, X. R.; Cagney, G.; Cantin, G. T.; Cardasis, H. L.; Celis, J. E.; Chaerkady, R.; Chu, F.; Cole, P. A.; Costello, C. E.; Cotter, R. J.; Crockett, D.; DeLany, J. P.; De Marzo, A. M.; DeSouza, L. V.; Deutsch, E. W.; Dransfield, E.; Drewes, G.; Droit, A.; Dunn, M. J.; Elenitoba-Johnson, K.; Ewing, R. M.; Van Eyk, J.; Faca, V.; Falkner, J.; Fang, X.; Fenselau, C.; Figeys, D.; Gagne, P.; Gelfi, C.; Gevaert, K.; Gimble, J. M.; Gnad, F.; Goel, R.; Gromov, P.; Hanash, S. M.; Hancock, W. S.; Harsha, H. C.; Hart, G.; Hays, F.; He, F.; Hebbar, P.; Helsens, K.; Hermeking, H.; Hide, W.; Hjerno, K.; Hochstrasser, D. F.; Hofmann, O.; Horn, D. M.; Hruban, R. H.; Ibarrola, N.; James, P.; Jensen, O. N.; Jensen, P. H.; Jung, P.; Kandasamy, K.; Kheterpal, I.; Kikuno, R. F.; Korf, U.; Korner, R.; Kuster, B.; Kwon, M. S.; Lee, H. J.; Lee, Y. J.; Lefevre, M.; Lehvaslaiho, M.; Lescuyer, P.; Levander, F.; Lim, M. S.; Lobke, C.; Loo, J. A.; Mann, M.; Martens, L.; Martinez-Heredia, J.; McComb, M.; McRedmond, J.; Mehrle, A.; Menon, R.; Miller, C. A.; Mischak, H.; Mohan, S. S.; Mohmood, R.; Molina, H.; Moran, M. F.; Morgan, J. D.; Moritz, R., et al. Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 2008, 26, 164-7. Pubmed Link
Lavatelli, F.; Perlman, D. H.; Spencer, B.; Prokaeva, T.; McComb, M. E.; Theberge, R.; Connors, L. H.; Bellotti, V.; Seldin, D. C.; Merlini, G.; Skinner, M.; Costello, C. E. Amyloidogenic and associated proteins in systemic amyloidosis proteome of adipose tissue. Mol Cell Proteomics 2008, 7, 1570-83. Pubmed Link
Kingsbury, J. S.; Laue, T. M.; Klimtchuk, E. S.; Theberge, R.; Costello, C. E.; Connors, L. H. The modulation of transthyretin tetramer stability by cysteine 10 adducts and the drug diflunisal. Direct analysis by fluorescence-detected analytical ultracentrifugation. J Biol Chem 2008, 283, 11887-96. Pubmed Link
Kelleher, D.; Gilmore, R.; Costello, C. E.; Robbins, P. W.; J Unique Asn-linked Oligosaccharides of the Human Pathogen Entamoeba histolytica. J. Biol. Chem. 2008, 283, 18355-18364. Pubmed Link
Hitchcock, A.; Yates, K. E.; Costello, C.; Zaia, J. Comparative Glycomics of Connective Tissue Glycosaminoglycans Proteomics 2008, 8, 1384-97. Pubmed Link
Brennan, M. R.; Costello, C. E.; Maleknia, S. D.; Pettit, G. R.; Erickson, K. L. Stylopeptide 2, a Proline-Rich Cyclodecapeptide from the Sponge Stylotella sp. J. Nat. Prod. 2008, 71, 453-456. Pubmed Link
Zaia, J.; Miller, M. J. C.; Seymour, J. L.; Costello, C. E. The Role of Mobile Protons in Negative Ion CID of Oligosaccharides. J. Am. Soc. Mass Spectrom. 2007, 18, 952-960. Pubmed Link
Xie, B.; Luo, X.; Zhao, C.; Priest, C. M.; Chan, S. Y.; PB, O. C.; Kirschner, D. A.; Costello, C. E. Molecular Characterization of Myelin Protein Zero in Xenopus laevis Peripheral Nerve: Equilibrium between Non-covalently Associated Dimer and Monomer. Int J Mass Spectrom 2007, 268, 304-315. Pubmed Link
Wang, Y.; Meriin, A. B.; Costello, C. E.; Sherman, M. Y. Characterization of proteins associated with polyglutamine aggregates: a novel approach towards isolation of aggregates from protein conformation disorders. Prion 2007, 1, 128-35. Pubmed Link
Wada, Y.; Azadi, P.; Costello, C. E.; Dell, A.; Dwek, R. A.; Geyer, H.; Geyer, R.; Kakehi, K.; Karlsson, N. G.; Kato, K.; Kawasaki, N.; Khoo, K. H.; Kim, S.; Kondo, A.; Lattova, E.; Mechref, Y.; Miyoshi, E.; Nakamura, K.; Narimatsu, H.; Novotny, M. V.; Packer, N. H.; Perreault, H.; Peter-Katalinic, J.; Pohlentz, G.; Reinhold, V. N.; Rudd, P. M.; Suzuki, A.; Taniguchi, N. Comparison of the methods for profiling glycoprotein glycans: HUPO HGPI (Human Proteome Organisation Human Disease Glycomics/Proteome Initiative) multi-institutional study. Glycobiology 2007, 17, 411-422. Pubmed Link
Sethuraman, M.; Clavreul, N.; Huang, H.; McComb, M. E.; Costello, C. E.; Cohen, R. A. Quantification of oxidative posttranslational modifications of cysteine thiols of p21ras associated with redox modulation of activity using isotope-coded affinity tags and mass spectrometry. Free radical biology & medicine 2007, 42, 823-9. Pubmed Link
Saba, J. A.; McComb, M. E.; Potts, D. L.; Costello, C. E.; Amar, S. Proteomic mapping of stimulus-specific signaling pathways involved in THP-1 cells exposed to Porphyromonas gingivalis or its purified components. J Proteome Res 2007, 6, 2211-21. Pubmed Link
Perlman, D. H.; Huang, H.; Dauly, C.; Costello, C. E.; McComb, M. E. Coupling of protein HPLC to MALDI-TOF MS using an on-target device for fraction collection, concentration, digestion, desalting, and matrix/analyte cocrystallization. Anal. Chem. 2007, 79, 2058-66. Pubmed Link
Odhiambo, A.; Perlman, D. H.; Huang, H.; Costello, C. E.; Farber, H. W.; Steinberg, M. H.; McComb, M. E.; Klings, E. S. Identification of oxidative post-translational modification of serum albumin in patients with idiopathic pulmonary arterial hypertension and pulmonary hypertension of sickle cell anemia. Rapid Commun Mass Spectrom 2007, 21, 2195-203. Pubmed Link
Moody, D. B.; Young, D. C.; Costello, C. E. Methods and compositions for immunomodulation using CD1 antigens. US Patent 7,253,159 2007, . Pubmed Link
McComb, M. E.; Perlman, D. H.; Huang, H.; Costello, C. E. Evaluation of an on-target sample preparation system for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in conjunction with normal-flow peptide high-performance liquid chromatography for peptide mass fingerprint analyses. Rapid Commun Mass Spectrom 2007, 21, 44-58. Pubmed Link
Kranz, C.; Ng, B. G.; Sun, L.; Sharma, V.; Eklund, E. A.; Miura, Y.; Ungar, D.; Lupashin, V.; Winkel, R. D.; Cipollo, J. F.; Costello, C. E.; Loh, E.; Hong, W.; Freeze, H. H. COG8 deficiency causes new congenital disorder of glycosylation type IIh. Hum Mol Genet 2007, 16, 731-41. Pubmed Link
Jedrychowski, M. P.; Berg, E. A.; Costello, C. E.; Gygi, S. P.; Pf Cellular spelunking: exploring adipocyte caveloae. The Journal of Lipid Research 2007, 48, 2103-2111. Pubmed Link
Garner, C. E.; Smith, S.; Costello, B. d. L.; White, P.; R Volatile organic compounds from feces and their potential for diagnosis of gastrointestinal disease. The FASEB Journal 2007, 21, 1675-1688. Pubmed Link
Costello, C. E.; Contado-Miller, J. M.; Cipollo, J. F. A glycomics platform for the analysis of permethylated oligosaccharide alditols. J Am Soc Mass Spectrom 2007, 18, 1799-812. Pubmed Link
Connors, L. H.; Jiang, Y.; Budnik, M.; Theberge, R.; Prokaeva, T.; Bodi, K. L.; Seldin, D. C.; Costello, C. E.; Skinner, M. Heterogeneity in primary structure, post-translational modifications, and germline gene usage of nine full-length amyloidogenic kappa1 immunoglobulin light chains. Biochemistry 2007, 46, 14259-71. Pubmed Link