Daniel Gusenleitner

Daniel-G
Ph.D. Candidate, Bioinformatics, Boston University
Monti Lab

Education

B.S., Bioinformatics, University of Applied Science Hagenberg, Austria, 2008
M.S., Bioinformatics, Högskolan Skövde, Sweden, 2009
M.S., Biomedical Informatics, Univ. of Applied Science Hagenberg, Austria, 2010

Contact Information

Email: gusef@bu.edu

Research Interests

  • Computational Discovery of the Hallmarks of Cancer
  • Genomic Signatures of Carcinogenicity
  • Identifying Oxidative Phosphorylation-dependent Cancer Subtypes

Publications

  • Liu F, White JA, Anotnescu C, Gusenleitner D, Quackenbush J, 2011, GCOD – GeneChip Oncology Database. BMC Bioinformatics, 12, p.46.  PMCID: PMC3045303
  • Culhane A, Schroder M, Sultana R, Picard S, Martinelli E, Kelly C, Haibe-Kains B, Kapushesky M, St Pierre A, Flahive W, Picard K, Gusenleitner D, Papenhausen G, O’Connor N, Correll M, Quackenbush J, 2012,  GeneSigDB: a manually curated database and resource for analysis of gene expression signatures, Nucleic Acids Res. 2012: D1060-6. PMCID: PMC3245038
  • Gusenleitner D, Howe E, Bentink S, Quackenbush J, Culhane A – iBBiG: Iterative Binary Bi-clustering of Gene Sets, Bioinformatics 2012, 28(19):2484-92, PMCID: PMC3463116
  • Schroeder M, Gusenleitner D, Quackenbush J, Culhane A, Haibe-Kains B – RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface, Bioinformatics 2013, 29(5):666-8, PMCID: PMC3582261
  • Gusenleitner D,  Auerbach S,  Sherr D,  Monti S,  Genomic  models  of  short-term exposure accurately predict long-term chemical carcinogenicity and identify putative mechanisms of action, 2014, PLoS ONE 9(7): e102579.
  • Carey CD, Gusenleitner D, Chapuy B, Kovach AE, Kluk MJ, Sun HH,  Crossland RE, Bacon CM, Rand V, Dal Cin P, Le LP, Neuberg D, Sohani AR, Shipp MA, Monti S, Rodig SJ, Molecular Classification of Aggressive B-cell Lymphomas Using Targeted Profiling of Fixed Biopsy Specimens, 2014, (submitted)

Bioconductor/R packages:

iBBiG (Iterative Binary Biclustering of Genesets): http://www.bioconductor.org/packages/2.11/bioc/html/iBBiG.html

RamiGO (AmiGO visualize R interface): http://bioconductor.org/packages/2.9/bioc/html/RamiGO.html